Gene
rbfox1
- ID
- ZDB-GENE-040927-11
- Name
- RNA binding fox-1 homolog 1
- Symbol
- rbfox1 Nomenclature History
- Previous Names
-
- a2bp1
- zgc:103635 (1)
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to enable mRNA binding activity. Acts upstream of or within several processes, including left ventricular cardiac muscle tissue morphogenesis; regulation of alternative mRNA splicing, via spliceosome; and swimming behavior. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; heart; nervous system; neural keel; and skeletal muscle. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human RBFOX1 (RNA binding fox-1 homolog 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 12 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:103635 (9 images)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR025670 | Fox-1 C-terminal domain |
| Domain | IPR034237 | FOX1, RNA recognition motif |
| Family | IPR017325 | RNA binding protein fox-1 homolog 1-3 |
| Family | IPR047131 | RNA binding protein fox-1 homolog 1-like |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Fox-1 C-terminal domain | FOX1, RNA recognition motif | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA binding protein fox-1 homolog 1-3 | RNA binding protein fox-1 homolog 1-like | RNA recognition motif domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6YYC7 | InterPro | 377 | |||||||
| UniProtKB:A0A8M9PY79 | InterPro | 368 | |||||||
| UniProtKB:A0A8M9PMK8 | InterPro | 362 | |||||||
| UniProtKB:A0A8M9PY74 | InterPro | 391 | |||||||
| UniProtKB:A0A8M6YWH6 | InterPro | 355 | |||||||
| UniProtKB:A0A8M9P6C2 | InterPro | 364 | |||||||
| UniProtKB:A0A8M6YWH2 | InterPro | 395 | |||||||
| UniProtKB:A0A8M9PUS3 | InterPro | 388 | |||||||
| UniProtKB:A0A8M9PY70 | InterPro | 394 | |||||||
| UniProtKB:A0A8M9P6B9 | InterPro | 377 | |||||||
| UniProtKB:A0A8M9PUS8 | InterPro | 364 | |||||||
| UniProtKB:Q642J5 | InterPro | 373 | |||||||
| UniProtKB:A0A8M6YVW0 | InterPro | 372 | |||||||
| UniProtKB:A0A8M6Z4X9 | InterPro | 375 | |||||||
| UniProtKB:A0A8M9PY89 | InterPro | 337 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rbfox1-202
(1)
|
Ensembl | 3,190 nt | ||
| mRNA |
rbfox1-203
(1)
|
Ensembl | 944 nt | ||
| mRNA |
rbfox1-204
(1)
|
Ensembl | 759 nt | ||
| mRNA |
rbfox1-205
(1)
|
Ensembl | 774 nt | ||
| mRNA |
rbfox1-206
(1)
|
Ensembl | 865 nt | ||
| mRNA |
rbfox1-207
(1)
|
Ensembl | 4,963 nt | ||
| mRNA |
rbfox1-208
(1)
|
Ensembl | 4,987 nt | ||
| ncRNA |
rbfox1-002
(1)
|
Ensembl | 662 nt |
Interactions and Pathways
No data available
Plasmids
No data available