Gene
pdcd11
- ID
- ZDB-GENE-030131-4076
- Name
- programmed cell death 11
- Symbol
- pdcd11 Nomenclature History
- Previous Names
-
- cb680 (1)
- im:7148359
- sb:cb680
- wu:fc68c10
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to nucleolus and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; head; midbrain; musculature system; and segmental plate. Orthologous to human PDCD11 (programmed cell death 11).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 15 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb680 (18 images)
- IMAGE:7148359 (11 images)
Wild Type Expression Summary
- All Phenotype Data
- 4 figures from Yang et al., 2020
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR003029 | S1 domain |
Domain | IPR008847 | Suppressor of forked |
Domain | IPR048058 | rRNA biogenesis protein RRP5, S1 domain, eleventh repeat |
Domain | IPR048059 | rRNA biogenesis protein RRP5, S1 domain, first repeat |
Family | IPR045209 | rRNA biogenesis protein Rrp5 |
Homologous_superfamily | IPR011990 | Tetratricopeptide-like helical domain superfamily |
Homologous_superfamily | IPR012340 | Nucleic acid-binding, OB-fold |
Repeat | IPR003107 | HAT (Half-A-TPR) repeat |
Domain Details Per Protein
Protein | Length | HAT (Half-A-TPR) repeat | Nucleic acid-binding, OB-fold | rRNA biogenesis protein Rrp5 | rRNA biogenesis protein RRP5, S1 domain, eleventh repeat | rRNA biogenesis protein RRP5, S1 domain, first repeat | S1 domain | Suppressor of forked | Tetratricopeptide-like helical domain superfamily |
---|---|---|---|---|---|---|---|---|---|
UniProtKB:A0A8M1NCQ8
|
1816 | ||||||||
UniProtKB:A0A8M2B6U9
|
1815 | ||||||||
UniProtKB:Q502F4
|
409 | ||||||||
UniProtKB:Q1ED11
|
1431 |
Type | Name | Annotation Method | Length (nt) | Analysis |
---|---|---|---|---|
mRNA |
pdcd11-202
(1)
|
Havana | 5793 nt | |
ncRNA |
pdcd11-002
(1)
|
Havana | 851 nt |
Interactions and Pathways
No data available
Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
---|---|---|---|---|---|---|---|
Ab1-pdcd11 | polyclonal | Rabbit |
|
Millipore
|
2 |
Plasmids
No data available