ZFIN ID: ZDB-GENE-010426-2
Gene Name: cryptochrome circadian clock 1aa
Gene Symbol: cry1aa

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Previous Names: cry1a, zcry1a (1), zgc:153885

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 15 figures from 10 publications
Wild-type Stages, Structures: Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth) to Adult (90d-730d, breeding adult)
  brain, diencephalon, optic tectum, retinal ganglion cell layer (all 7) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20229 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cry1aa HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process entrainment of circadian clock (more)
    Cellular Component nucleus (more)
    Molecular Function protein binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005101 (1)
  • InterPro:IPR006050 (1)
  • InterPro:IPR014729 (1)
  • PROSITE:PS51645 (1)
  • Pfam:PF00875 (1)
  • Pfam:PF03441 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA cry1aa-001 (1) 2364
    mRNA cry1aa-002 (1) 3301
    cry1aa-003 (1) 1984
    ncRNA cry1aa-004 (1) 2854
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cry1aa No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cry1aaContained in: [BAC] DKEY-222F8 (1) (order this)
    cry1aaEncodes: [cDNA] MGC:153885 (1) (order this), MGC:161968 (1) (order this), MGC:194757 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077297 (1) 3361bp
    Genomic GenBank:BX005210 (1) 207949bp Blast at MegaBLAST
    Polypeptide UniProtKB:A4QN37 (1) 619aa
    Sequence Clusters UniGene:82313 (1)
    Sequence Information (all 24)
    OTHER cry1aa GENE PAGES
  • Gene:100003956 (1)
  • VEGA:OTTDARG00000007625 (1)
  • Ensembl(GRCz10):ENSDARG00000045768 (1)
  • ORTHOLOGY for cry1aa (Chr: 4)
    Species Symbol Chromosome Accession # Evidence
    Human CRY1 12
  • Gene:1407
  • OMIM:601933
  • HGNC:2384
  • Amino acid sequence comparison (5)
    Conserved genome location (synteny) (3)
    Phylogenetic tree (1)
    Mouse Cry1 10
  • MGI:1270841
  • Gene:12952
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (51)