ZFIN ID: ZDB-GENE-010426-2
Gene Name: cryptochrome circadian clock 1a
Gene Symbol: cry1a
Previous Names: zcry1a (1), zgc:153885
Location: Chr: 4   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 10 figures from 6 publications
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
  brain, unspecified
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa20229
PHENOTYPE No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process entrainment of circadian clock (more)
Cellular Component nucleus (more)
Molecular Function protein binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005101 (1)
  • InterPro:IPR006050 (1)
  • InterPro:IPR014729 (1)
  • PROSITE:PS51645 (1)
  • Pfam:PF00875 (1)
  • Pfam:PF03441 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA cry1a-001 (1) 2364
    mRNA cry1a-002 (1) 3301
    cry1a-003 (1) 1984
    ncRNA cry1a-004 (1) 2854
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cry1a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cry1a Contained in: [BAC] DKEY-222F8 (1)
    cry1a Encodes: [cDNA] MGC:153885 (1) (order this), MGC:161968 (1) (order this), MGC:194757 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077297 (1) 3361 bp
    Genomic GenBank:BX005210 (1) 207949 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A4QN37 (1) 619 aa
    Sequence Clusters UniGene:82313 (1)
    Sequence Information (all 23)
    OTHER cry1a GENE PAGES
  • Gene:100003956 (1)
  • VEGA:OTTDARG00000007625 (1)
  • Ensembl(Zv9):ENSDARG00000045768 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish cry1a 4  
    Human CRY1 12 (12q23-q24.1)
  • OMIM:601933
  • Gene:1407
  • Mouse Cry1 10 ( 41.63 cM)
  • MGI:1270841
  • Gene:12952
  • Orthology Details
    CITATIONS (41)