Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-010426-2
Gene Name: cryptochrome circadian clock 1a
Gene Symbol: cry1a
Previous Names: zcry1a (1), zgc:153885
Location: Chr: 4   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 10 figures from 6 publications
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
  brain, unspecified
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa20229
PHENOTYPE No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process entrainment of circadian clock (more)
Cellular Component nucleus (more)
Molecular Function CONTRIBUTES_TO protein binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005101 (1)
  • InterPro:IPR006050 (1)
  • InterPro:IPR014729 (1)
  • PROSITE:PS51645 (1)
  • Pfam:PF00875 (1)
  • Pfam:PF03441 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA cry1a-001 (1) 2364
    mRNA cry1a-002 (1) 3301
    cry1a-003 (1) 1984
    ncRNA cry1a-004 (1) 2854
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM cry1a No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cry1a Contained in: [BAC] DKEY-222F8 (1)
    cry1a Encodes: [cDNA] MGC:153885 (1) (order this), MGC:161968 (1) (order this), MGC:194757 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077297 (1) 3361 bp
    Genomic GenBank:BX005210 (1) 207949 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A4QN37 (1) 619 aa
    Sequence Clusters UniGene:82313 (1)
    Sequence Information (all 23)
    OTHER cry1a GENE PAGES
  • Gene:100003956 (1)
  • VEGA:OTTDARG00000007625 (1)
  • Ensembl(Zv9):ENSDARG00000045768 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish cry1a 4  
    Human CRY1 12 (12q23-q24.1)
  • OMIM:601933
  • Gene:1407
  • Mouse Cry1 10 ( 41.63 cM)
  • MGI:1270841
  • Gene:12952
  • Orthology Details
    CITATIONS (40)