ZFIN ID: ZDB-GENE-010426-2
Gene Name: cryptochrome circadian clock 1aa
Gene Symbol: cry1aa
Previous Names: cry1a, zcry1a (1), zgc:153885
Location: Chr: 4 Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 14 figures from 9 publications
Wild-type Stages, Structures: Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth) to Adult (90d-730d, breeding adult)
  brain, diencephalon, optic tectum, retinal ganglion cell layer (all 7) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Mutagen Suppliers
sa20229 Point Mutation ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cry1aa HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process entrainment of circadian clock (more)
    Cellular Component nucleus (more)
    Molecular Function protein binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005101 (1)
  • InterPro:IPR006050 (1)
  • InterPro:IPR014729 (1)
  • PROSITE:PS51645 (1)
  • Pfam:PF00875 (1)
  • Pfam:PF03441 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA cry1a-001 (1) 2364
    mRNA cry1a-002 (1) 3301
    cry1a-003 (1) 1984
    ncRNA cry1a-004 (1) 2854
    GENE PRODUCT DESCRIPTION
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cry1aa No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cry1aaContained in: [BAC] DKEY-222F8 (1) (order this)
    cry1aaEncodes: [cDNA] MGC:153885 (1) (order this), MGC:161968 (1) (order this), MGC:194757 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077297 (1) 3361bp
    Genomic GenBank:BX005210 (1) 207949bp Blast at MegaBLAST
    Polypeptide UniProtKB:A4QN37 (1) 619aa
    Sequence Clusters UniGene:82313 (1)
    Sequence Information (all 24)
    OTHER cry1aa GENE PAGES
  • Gene:100003956 (1)
  • VEGA:OTTDARG00000007625 (1)
  • Ensembl(GRCz10):ENSDARG00000045768 (1)
  • ORTHOLOGY for cry1aa (Chr: 4)
    Species Symbol Chromosome Accession # Evidence
    Human CRY1 12
  • Gene:1407
  • OMIM:601933
  • HGNC:2384
  • Amino acid sequence comparison (5)
    Conserved genome location (synteny) (3)
    Phylogenetic tree (1)
    Mouse Cry1 10
  • MGI:1270841
  • Gene:12952
  • Amino acid sequence comparison (2)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (46)