Gene

elavl1b

ID

ZDB-GENE-000210-17

Name

ELAV like RNA binding protein 1b

Symbol

elavl1b Nomenclature History

Previous Names

etID19626.11 (1)
fb72d01
fk65g02
hug (1)
wu:fb72d01 (1)
wu:fk65g02 (1)
zHuG (1)

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to localize to ribonucleoprotein complex and viral nucleocapsid. Orthologous to human ELAVL1 (ELAV like RNA binding protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55217 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Frese et al., 2015
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With elavl1b Human Ortholog

No data available

Associated With elavl1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Family	IPR002343	Paraneoplastic encephalomyelitis antigen
Family	IPR006548	Splicing factor ELAV/Hu
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	Paraneoplastic encephalomyelitis antigen	RNA-binding domain superfamily	RNA recognition motif domain	Splicing factor ELAV/Hu
UniProtKB:A0A2R8QLQ0 InterPro	339
UniProtKB:Q9PTK4 InterPro	322
UniProtKB:A0A2R8QTX4 InterPro	360
UniProtKB:A0A2R8Q8X4 InterPro	359
UniProtKB:A0A0R4IWC9 InterPro	208
UniProtKB:A0A8M6Z8M3 InterPro	338

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	elavl1b-201 (1) Ensembl	Ensembl	321 nt	Select Tool
mRNA	elavl1b-202 (1) Ensembl	Ensembl	411 nt	Select Tool
mRNA	elavl1b-203 (1) Ensembl	Ensembl	377 nt	Select Tool
mRNA	elavl1b-204 (1) Ensembl	Ensembl	319 nt	Select Tool
mRNA	elavl1b-205 (1) Ensembl	Ensembl	372 nt	Select Tool
mRNA	elavl1b-206 (1) Ensembl	Ensembl	326 nt	Select Tool
mRNA	elavl1b-207 (1) Ensembl	Ensembl	2,105 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-208 (1) Ensembl	Ensembl	278 nt	Select Tool
mRNA	elavl1b-209 (1) Ensembl	Ensembl	1,764 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-210 (1) Ensembl	Ensembl	2,272 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-211 (1) Ensembl	Ensembl	2,168 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-212 (1) Ensembl	Ensembl	2,269 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-213 (1) Ensembl	Ensembl	2,196 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-214 (1) Ensembl	Ensembl	2,209 nt	Select Tool ZFIN BLAST
mRNA	elavl1b-215 (1) Ensembl	Ensembl	2,259 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations