ZFIN Sequences for Gene: opn1sw2

ZFIN ID: ZDB-GENE-990604-40

ZFIN ID: ZDB-GENE-990604-40

SEQUENCE INFORMATION

Gene Name:	opsin 1 (cone pigments), short-wave-sensitive 2
Gene Symbol:	opn1sw2

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_131192 (1)	1413 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073915486 (1)	1678 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_073915487 (1)	1668 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AF109372 (1)	1424 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC062277 (1)	1421 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC059418 (1)	1412 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC153615 (1)	1318 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:KT008398 (1)	1065 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01026814 (1)	614 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQQ01066566 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:AL844847 (1)	235174 nt	Blast at MegaBLAST
	GenBank:CT573282 (1)	121172 nt	Select Tool MegaBLAST Ensembl
	GenBank:AY512504 (1)	5251 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	GenBank:AB087809 (2)	4238 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	GenBank:JBMGRA010000011 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl
Polypeptide	UniProtKB:A0AC58GPC4 (1)	354 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0AC58GPE3 (1)	354 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A8E5J4 (1)	354 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q9W6A8 (1)	354 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_571267 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073771587 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_073771588 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAD24755 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAH59418 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAH62277 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAI53616 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:ALG92538 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:BAC24133 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:CAE30415 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:Q9W6A8 (1)	354 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAR98529 (1)	1 aa	Select Tool ZFIN BLAST NCBI BLAST

opn1sw2 CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] DKEY-13A21 (1)	Genomic	GenBank:AL844847	235174	Blast at MegaBLAST
[BAC] DKEY-245F22 (2)	Genomic	GenBank:CT573282	121172	Select Tool MegaBLAST Ensembl

opn1sw2 ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[CDNA] MGC:73033 (2)	RNA	GenBank:BC059418	1412	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[CDNA] MGC:77574 (1)	RNA	GenBank:BC062277	1421	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[CDNA] MGC:174476 (1)	RNA	GenBank:BC153615	1318	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT