ZFIN ID: ZDB-GENE-990604-40
Gene Name: opsin 1 (cone pigments), short-wave-sensitive 2
Gene Symbol: opn1sw2
Sequence Ontology ID : SO:0000704

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Previous Names: SWS2 (1), bluops, zfblue

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have G protein-coupled photoreceptor activity; predicted to be involved in G protein-coupled receptor signaling pathway, cellular response to light stimulus, and phototransduction;  ...
GENE EXPRESSION
All Expression Data: 52 figures from 38 publications
Directly Submitted Expression Data: 7 figures (3 images) from Thisse et al., 2004 [MGC:73033]
Wild-type Stages, Structures: Pharyngula:High-pec (42.0h-48.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa38844 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41842 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH opn1sw2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH opn1sw2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process G protein-coupled receptor signaling pathway (more)
    Cellular Component photoreceptor outer segment (more)
    Molecular Function G protein-coupled receptor activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000276 (1)
  • InterPro:IPR001521 (1)
  • InterPro:IPR001760 (1)
  • InterPro:IPR017452 (1)
  • InterPro:IPR027430 (1)
  • PROSITE:PS00237 (1)
  • PROSITE:PS00238 (1)
  • PROSITE:PS50262 (1)
  • Pfam:PF00001 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA opn1sw2-201 (1) 1413
    opn1sw2-202 (1) 888
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM opn1sw2
    MARKER RELATIONSHIPS
    opn1sw2Contained in: [BAC] DKEY-13A21 (order this), DKEY-245F22 (1) (order this)
    opn1sw2Encodes: [cDNA] MGC:73033 (1) (order this), MGC:77574 (1) (order this), MGC:174476 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131192 (1) 1424bp
    Genomic GenBank:AL844847 235174bp Blast at MegaBLAST
    Polypeptide UniProtKB:A8E5J4 (1) 354aa
    Sequence Clusters UniGene:81284 (1)
    Sequence Information (all 28)
    OTHER opn1sw2 GENE PAGES
  • Alliance (1)
  • Gene:30435 (1)
  • VEGA:OTTDARG00000023782 (1)
  • ORTHOLOGY for opn1sw2 (Chr: 11)
    CITATIONS (92)