ZFIN Sequences for Gene: ccdc40

ZFIN ID: ZDB-GENE-060503-723

SEQUENCE INFORMATION

Gene Name:	coiled-coil domain 40 molecular ruler complex subunit
Gene Symbol:	ccdc40

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001271813 (1)	3381 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009302358 (1)	3386 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GDQH01015060 (1)	2000 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC092181 (1)	1870 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:EH453978 (1)	581 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI384873 (1)	410 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AI384382 (1)	363 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:CK687058 (1)	313 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX571728 (1)	229059 nt	Blast at MegaBLAST
	GenBank:CR854963 (1)	181381 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX005286 (1)	178225 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q56A40 (1)	941 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3B0F1 (1)	933 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001258742 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009300633 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:Q56A40 (1)	941 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAH92181 (1)	605 aa	Select Tool ZFIN BLAST NCBI BLAST

ccdc40 CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] DKEY-31G6 (1)	Genomic	GenBank:CR854963	181381	Select Tool MegaBLAST Ensembl
[BAC] DKEY-210O7 (1)	Genomic	GenBank:BX571728	229059	Blast at MegaBLAST
[BAC] DKEY-237I9 (1)	Genomic	GenBank:BX005286	178225	Select Tool MegaBLAST Ensembl

ccdc40 ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[EST] fb11d02 (2)	RNA	GenBank:AI384873	410	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AI384382	363	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] IMAGE:7149866 (1)	RNA	GenBank:CK687058	313	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT