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ZIRC
ZFIN ID: ZDB-GENE-060503-723
Gene Name: coiled-coil domain containing 40
Gene Symbol: ccdc40
Sequence Ontology ID : SO:0000704

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Previous Names: im:7149866, lok, si:dkey-237i9.5, wu:fb11d02

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in axoneme assembly; determination of left/right symmetry; and pronephros development. Predicted to localize to the axoneme. Used to study primary ciliary dyskinesia. Human ortholog(s) of  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la029191Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m505 Unknown Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8996 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13373 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tj8 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tl215 Unknown Unknown Unknown ENU
    tm138a Unknown Unknown Unknown ENU
    to237b Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • ts277 Unknown Unknown Unknown ENU
    Targeting reagents:
    DISEASE ASSOCIATED WITH ccdc40 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    primary ciliary dyskinesia 15 Ciliary dyskinesia, primary, 15 613808
    DISEASE ASSOCIATED WITH ccdc40 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    primary ciliary dyskinesia ccdc40to237b/to237b standard conditions Song et al., 2016
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axoneme assembly (more)
    Cellular Component cilium (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR037386 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ccdc40-202 (1) 3370
    ncRNA ottdart00000054945 (1) 583
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ccdc40 No data available
    MARKER RELATIONSHIPS
    ccdc40Contained in: [BAC] DKEY-31G6 (1) (order this), DKEY-210O7 (order this), DKEY-237I9 (1) (order this)
    ccdc40Encodes: [EST] fb11d02, IMAGE:7149866 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001271813 (1)
    Genomic GenBank:BX571728 229059bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A2R8PW94 (1) 941aa
    Sequence Clusters UniGene:157455 (1)
    Sequence Information (all 21)
    ORTHOLOGY for ccdc40 (Chr: 6)
    CITATIONS (43)