ZFIN Sequences for Gene: pcdh15a

ZFIN ID: ZDB-GENE-030616-3

ZFIN ID: ZDB-GENE-030616-3

SEQUENCE INFORMATION

Gene Name:	protocadherin-related 15a
Gene Symbol:	pcdh15a

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001012482 (1)	6521 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_017358709 (1)	6418 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_017358710 (1)	6415 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_017358711 (1)	6415 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_017358712 (1)	6412 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_017358713 (1)	6379 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_017358714 (1)	6376 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009307525 (1)	6142 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009307527 (1)	6127 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AY772390 (1)	6487 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01029616 (1)	6220 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:KY432405 (1)	5786 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AL922518 (1)	535 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX324172 (1)	184555 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX548002 (2)	149569 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX005204	146297 nt	Select Tool MegaBLAST Ensembl
	GenBank:BX005204 (2)	126262 nt	Select Tool MegaBLAST Ensembl
	GenBank:AL592062 (1)	106778 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR381612 (1)	96276 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU467855 (2)	91934 nt	Select Tool MegaBLAST Ensembl
	GenBank:AL645689 (1)	82848 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU856144 (2)	41153 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU856346 (2)	20338 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	GenBank:CU467884 (2)	16449 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	GenBank:CU075715 (2)	7509 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	GenBank:DU645086 (1)	406 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
	GenBank:DU730974 (1)	333 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl
Polypeptide	UniProtKB:A0A8M3B5H0 (1)	1806 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M3AZF2 (1)	1801 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q5ICW6 (1)	1796 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M6Z1L7 (1)	1727 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A1V0D7A1 (1)	1726 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M6Z284 (1)	1726 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M6Z3R5 (1)	1725 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M6Z9I8 (1)	1714 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M6Z1M2 (1)	1713 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001012500 (1)	1796 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009305800 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009305802 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_017214198 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_017214199 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_017214200 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_017214201 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_017214202 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_017214203 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAW50923 (1)	1796 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:CAD52120 (1)	623 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:CAK03588 (1)	623 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:CAD60623 (1)	479 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:ARA90564 (1)		Select Tool ZFIN BLAST NCBI BLAST

pcdh15a CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] CH73-54D9 (1)	Genomic	GenBank:CU856144	41153	Select Tool MegaBLAST Ensembl
[BAC] CH73-176C21 (1)	Genomic	GenBank:CU856346	20338	Select Tool ZFIN BLAST NCBI BLAST Ensembl
[BAC] CH73-182C23 (1)	Genomic	GenBank:CU467855	91934	Select Tool MegaBLAST Ensembl
[BAC] CH73-283N9 (1)	Genomic	GenBank:CU075715	7509	Select Tool ZFIN BLAST NCBI BLAST Ensembl
[BAC] CH211-151G17 (1)	Genomic	GenBank:BX005204	146297	Select Tool MegaBLAST Ensembl
[BAC] CH211-170I2 (1)	Genomic	GenBank:BX548002	149569	Select Tool MegaBLAST Ensembl
[BAC] DKEY-257M21 (1)	Genomic	GenBank:CU467884	16449	Select Tool ZFIN BLAST NCBI BLAST Ensembl
[BAC] DKEY-274K7 (1)	Genomic	GenBank:CR381612	96276	Select Tool MegaBLAST Ensembl
[BAC] XX-BAC6CSE (1)	Genomic	GenBank:AL592062	106778	Select Tool MegaBLAST Ensembl
[BAC] XX-BAC7CSE (1)	Genomic	GenBank:AL645689	82848	Select Tool MegaBLAST Ensembl

pcdh15a ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[EST] eu634 (1)	Genomic	GenBank:DU730974	333	Select Tool ZFIN BLAST NCBI BLAST Ensembl
[EST] eu1029 (1)	Genomic	GenBank:DU645086	406	Select Tool ZFIN BLAST NCBI BLAST Ensembl