ZFIN ID: ZDB-GENE-020531-2

Mapping Details

Gene Name: aryl hydrocarbon receptor 1a
Symbol: ahr1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 16 20,013,827 - 20,038,263 GRCz11
Ensembl 16 20,013,827 - 20,038,263 GRCz11
Vega 16 20,208,008 - 20,232,444 GRCv10
NCBI Map Viewer 16 20,009,938 - 20,038,280 GRCz11
UCSC 16 - GRCv10
Mapped Clones containing ahr1a
DKEY-242C17 Chr: 16 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
mu152 16 20,037,454 - 20,037,459 GRCz11 Sugden et al., 2017
mu153 16 20,037,455 - 20,037,468 GRCz11 Sugden et al., 2017
mu154 16 20,037,454 - 20,037,470 GRCz11 Sugden et al., 2017
sa1410 16 20,024,004 GRCz11 Busch-Nentwich et al., 2013
16 20,218,185 GRCz10 Busch-Nentwich et al., 2013
16 22,111,742 Zv9 Busch-Nentwich et al., 2013
sa16655 16 20,017,631 GRCz11 Busch-Nentwich et al., 2013
16 20,211,812 GRCz10 Busch-Nentwich et al., 2013
16 22,105,369 Zv9 Busch-Nentwich et al., 2013
sa28637 16 20,019,808 GRCz11 Busch-Nentwich et al., 2013
16 20,213,989 GRCz10 Busch-Nentwich et al., 2013
16 22,107,546 Zv9 Busch-Nentwich et al., 2013
uab139 16 20,014,909 - 20,014,913 GRCz11 Souder et al., 2019

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z3104 SSLP 16 29.44 cR Hahn, 2005 mapped on the LN54 panel with PCR vectors as indicated:

ahr1a (maps to LG16) 000001010000000000000000000010000001001011011110001100010000001000111110000000010000011001101
ahr1a Linkage group 16, 29.44 cR from Z3104
The best overall marker (in linkage group 16) is linked to the query marker with a LOD of 12.0
The best marker in the second-best linkage group (linkage group 19) is linked to the query marker with a LOD of 3.2

OTHER MAPPING INFORMATION
Chr 16 Andreasen et al., 2002 Andreasen et al. (2002) mapped ahr1 to LG 16 using the LN54 Radiation Hybrid panel.