ZFIN ID: ZDB-GENE-010606-1

Mapping Details

Gene Name: cadherin 1, type 1, E-cadherin (epithelial)
Symbol: cdh1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 7 53,097,151 - 53,117,237 GRCz11
Ensembl 7 53,097,151 - 53,117,237 GRCz11
Vega 7 52,827,499 - 52,847,585 GRCv10
NCBI Map Viewer 7 53,096,255 - 53,117,237 GRCz11
UCSC 7 - GRCv10
Mapped Clones containing cdh1
DKEY-173L11 Chr: 7 Details
CH73-289B2 Chr: 7 Details
CH1073-125P9 Chr: 7 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
dtv43 7 53,100,187 GRCz11 Kane et al., 2005
rk3 7 53,116,984 GRCz11 Shimizu et al., 2005
sa41032 7 53,101,572 GRCz11 Busch-Nentwich et al., 2013
7 52,831,920 GRCz10 Busch-Nentwich et al., 2013
7 56,222,590 Zv9 Busch-Nentwich et al., 2013
tm94 7 53,103,463 GRCz11 Kane et al., 2005
ts18 7 53,103,327 GRCz11 Kane et al., 2005
tx230 7 53,100,434 GRCz11 ZFIN Curated Data
vu44 7 53,100,415 GRCz11 Kane et al., 2005
la011658Tg 7 56,207,176 - 56,207,186 Zv9

GENETIC MAPPING PANELS: No data available

OTHER MAPPING INFORMATION
Genomic Feature dtv43 is an allele of cdh1
Chr Location Mapped As Panel Mapped By Scoring
7 58.5 cM dtv43 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature rk3 is an allele of cdh1
Marker Type Chr Distance Publication / Person Comments
z8156 SSLP 7 Shimizu et al., 2005 Shimizu, T., et al. (Mech. Dev. 122:747-763) reports mapping the rk3 locus to LG 7, near the SSLP marker Z8156.
Genomic Feature tm94 is an allele of cdh1
Marker Type Chr Distance Publication / Person Comments
z6852 SSLP 7 2.2 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the avatm94 LG 7 using a mitoic map constructed from half-tetrad analysis of 90 fish.
z1239 SSLP 7 15.2 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the avatm94 LG 7 using a mitoic map constructed from half-tetrad analysis of 90 fish.
Genomic Feature dtv43 is an allele of cdh1
Marker Type Chr Distance Publication / Person Comments
z7958 SSLP 7 4.5 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the habdtb43 LG 7 using a mitoic map constructed from half-tetrad analysis of 222 fish.
z6852 SSLP 7 0.9 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the habdtb43 LG 7 using a mitoic map constructed from half-tetrad analysis of 222 fish.
z1239 SSLP 7 7.1 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the habdtb43 LG 7 using a mitoic map constructed from half-tetrad analysis of 222 fish.
z20715 SSLP 7 Kane et al., 2005
z8156 SSLP 7 Kane et al., 2005
fd21a02 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fb12g02 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fb64c10 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fb64f09 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fc89b01 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fi19d09 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fa11d03 EST 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
fgf3 GENE 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z14644 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z8252 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z8540 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z8604 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z9869 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z11625 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z1059 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z13880 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z1182 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z20576 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z20715 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z1239 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z3008 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z3445 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z6852 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z7244 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z7958 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z8156 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z8218 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z26442 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
z14401 SSLP 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using  ...
Genomic Feature tx230 is an allele of cdh1
Marker Type Chr Distance Publication / Person Comments
z7958 SSLP 7 8.8 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the wegtx230 LG 7 using a mitoic map constructed from half-tetrad analysis of 114 fish.
z1239 SSLP 7 8.4 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the wegtx230 LG 7 using a mitoic map constructed from half-tetrad analysis of 114 fish.
Genomic Feature ts18 is an allele of cdh1
Marker Type Chr Distance Publication / Person Comments
z7958 SSLP 7 11.0 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the lawts18 LG 7 using a mitoic map constructed from half-tetrad analysis of 163 fish.
z1239 SSLP 7 13.5 cM McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped the lawts18 LG 7 using a mitoic map constructed from half-tetrad analysis of 163 fish.
Genomic Feature rk3 is an allele of cdh1
Chr 7 Shimizu et al., 2005 Shimizu, T., et al. (Mech. Dev. 122:747-763) reports mapping the rk3 locus to LG 7, near the  ...
Genomic Feature dtv43 is an allele of cdh1
Chr 7 Kane et al., 2005
Chr 7 McFarland et al., 2005 McFarland et al. (2005, Developmental Dynamics 233:390-406) mapped LG 7 using a mitoic map  ...