Genomic Feature
pfu1
- ID
- ZDB-ALT-240703-7
- Name
- pfu1
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Alsina Lab
- Current Source
- Other Pages
-
Notes
| Comment | Citation |
|---|---|
| 2595 bp deletion on exon 2 of gene sall1a. The deletion is found at ... | Zebrafish Nomenclature Committee |
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 7: 37384064 - 37386658 (GRCz11) (1) Details
- Nucleotide change
- CACTCAGTGGTGTTGGAACTGGCCATGGAACGCTGGGAAGCACTGGGTCCAATCTGGGGA GCTCTGTCATCTCTGCCTCACTACCTCAGCTGGGTAACTTGACTGAGCTGGGCAATTTTT CCATGATCAACAGCAATGTCATTATTGAAAACCTACAGAGCACCAAAGTGGCTGTGGCCC AATTTTCTCAAGAAACCAGAGCAACAGGGGGGCAAAGGGTGGCTGTGCCAGCCCTCATGG AGCAGCTCTTGGCCCTGCAGCAGCAGCAGATTCACCAGCTACAGCTCATAGAGCAGATTC GTCACCAGATTCTTCTGTTAGCCTCACAGTCACCTGAGCTCCAAGCACCCCCTAGTTCTT CCCCAGTGACCTTAGGTTCAGGTACTAGCCCACTAACCACTCTTAGTTCCCATTTGTCTC AGCAGTTGGCAGCTGCCGCAGGGTTAGCACAGAGCATAGCTAGCCAGTCTGCGAGCATTA GCAGTTTGAAACAGATGGCTAATGTTGCGCAGCTACCTCAGAGCAATTCCAGTGTGGGAG AGTCATCTCAAAGCCTTGCAGCACCAGGGCCTGCTCCAGTTAATGCCCAACCTTTAGAAA AGAGGCCAGGCAATGCAGGAAGCTTGCATCCTCCATTAGGAAACCCATCACTTGCAAAGT CATCCACACCAGCCTTTGCAATGGGAAACCTTTTGAATCCTGTGGCTAATACCCTTCTAC CTCAGCCCCCGCCAGGCAACCCAATATTTTCCAGTGCACTGCCGAGCGTCGGTTCCACAG TTGAGGATCTCAATTCACTGGCTGCACTGGCTCAACAAAGAAAAGGCAAGCCACCCAATG TTTCTTCTTTTGAACCGAAGAGTAGCTCTGAGGACACATTTTTCAAGCATAAATGCAGGT TTTGTGGCAAGGTGTTTGGTAGTGACAGTGCACTGCAGATTCACTTACGTTCTCATACAG GTGAAAGGCCATACAAATGCAACATATGTGGCAACCGCTTTTCCACTCGTGGTAACTTAA AGGTTCATTTTCAGCGTCATAAAGAGAAGTATCCACACATTCAGATGAACCCATACCCTG TCCCAGAGCATCTAGACAATATTCCAACAAGTACTGGCATTCCCTATGGTATGTCTATGC CCCCTGAAAAACCAGTGACCAGCTGGTTGGATAGTAAACCTGTTCTGTCCACTCTGACAT CCTCTGTTGGCATGTTACTTCCACCAACTATACCAAGTCTGCCTCCATTCATAAAAAAGG AAGAGAATAACTCACTGGCTATAAGCAGCCCTTCTCATTCTGCTAAAAGCGACTCAGGTC CTGCTGACACACCCATGAAGAATACAGATAGTGTGTTGGAGGAAGGTGAGAGCACAACCC TGCCTACCTCAAACGGAAAAGCTGAAGAAAACAACCAGTCCTCCAATTTATTATCTAACA TGAGCTCTGCGGTGGAGGGTACAATAGAGTACACCACCTCCAACAGTCCTCCGATGGCCA CTAACCCACTCATGCCTCTGATGTCAGAACAGTTCAAAGCTAAATTTCCTTTTGGGGGTC TTCTCGATCCTCTCCAAGGCTCAGAAACATCAAAACTTCAGCAACTTGTTGAGAACATAG ACAGGAAGGTGGCAGATCCCAATGAGTGTGTTATCTGTCATCGTATTCTTAGTTGCCAGA GTGCACTGAAAATGCACTACCGCACGCACACAGGGGAGAGGCCTTTCAAATGTAAAGTGT GTGGTCGTGCCTTCACCACCAAGGGCAACCTCAAGACTCATTACAGTGTCCATCGAGCTA TGCCGCCACTGAGAGTCCAGCATTCATGTCCTATTTGCCAGAAGAAGTTCACAAATGCTG TGGTGTTGCAGCAGCACATTCGCATGCACATGGGTGGCCAGATCCCCAACACCCCACTTC CTGACAATTATCCAGAATCCATGGGATCCGATGCTGGATCTTTTGATGAGAGAAACATTG ATGATCTTGACAACTTCTCTGATGACAACATGGAAGGAATTGAGGATGGACCAGACAGCA GCATTCCAGACACACCAAAGTCAGTTGATGCATCTCAAGACAGCCTCTGTTCATCTCCTA CTCTACATGAGTCATTTGGCATGGACGAGAGGATCCAGGAGAAGAGTGCCAACCATGGAG CAGGAGAGGAAGTGCAGTATGATCAAGGGAAATCAGTGGAGAACGGTTTAGTGGAAGGAG ACAGATTCACAAATGACTCCTCTTCACTGGGGGGTGACATAGAAAGCCAAAGTGCCGGAA GTCCAGCTGTCTCTGAATCTACCTCTTCCATGCAAGCTCCGTCACCCTCTAATGGTATAT TCCAACAACAAAAGTCTCCTAGTATGGAAGATAGGCAGCAAAGGGCATTGTCATTGGAGC ACATTAGTGCAAGTCTCATGCATTCTAATTCTGCCAGTCCTGGAGCTCTGGATCTTACTT CAGTTAACTCATCTAAAGATCCTATTAGCATGCTTTTCCCCTTCCGTGAGCGAGGCACCT TGAAAAATACAGCATGTGATATCTGTGGCAAGACGTTTGCCTGCCAGAGTGCCTTGGACA TCCATTACCGTAGCC/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 2595 bp deleted in Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
GAGGAGGATAAGCATTAAACTGATTAACAGAAGATTAACAACAAAAGAATTTGAACAGATAAAGCTGCTTCTTCAGATACAAAACATCTCTAATCGCTAATCCCCCTGTTCCCCCCTCTTATTTTCTTCTACAGGGGACACAGAGACCAACCCGGACGACTCCCCCTGTAAAGACTCGGGTGCCCATGTCTGCAGCAGATGTTGCGCAGAGTTCTTTGAACTATCGGATCTTGAACAACACCAGAAGAATTGCACTAAGAATCAATTAGTTCTAATTGTGAATGAAAATCCAGTGTCTCCTTCCGGAACCTTCTCCCCAGGCTCCTCTCCTCATAATCCTGATGAGCAGATGAATGATACAACTAATAACACAGATCAAGCAGAGTTGACTGACCTTTTGGAGCAAAACATACTTGACAAAGAGGAGGCCATGGACACAGAGATGTCAGGAGTCTCTGCACCACACAATGATGGAAATGGTCGTATGGCAGGTAGCAGCC
CACTCAGTGGTGTTGGAACTGGCCATGGAACGCTGGGAAGCACTGGGTCCAATCTGGGGA GCTCTGTCATCTCTGCCTCACTACCTCAGCTGGGTAACTTGACTGAGCTGGGCAATTTTT CCATGATCAACAGCAATGTCATTATTGAAAACCTACAGAGCACCAAAGTGGCTGTGGCCC AATTTTCTCAAGAAACCAGAGCAACAGGGGGGCAAAGGGTGGCTGTGCCAGCCCTCATGG AGCAGCTCTTGGCCCTGCAGCAGCAGCAGATTCACCAGCTACAGCTCATAGAGCAGATTC GTCACCAGATTCTTCTGTTAGCCTCACAGTCACCTGAGCTCCAAGCACCCCCTAGTTCTT CCCCAGTGACCTTAGGTTCAGGTACTAGCCCACTAACCACTCTTAGTTCCCATTTGTCTC AGCAGTTGGCAGCTGCCGCAGGGTTAGCACAGAGCATAGCTAGCCAGTCTGCGAGCATTA GCAGTTTGAAACAGATGGCTAATGTTGCGCAGCTACCTCAGAGCAATTCCAGTGTGGGAG AGTCATCTCAAAGCCTTGCAGCACCAGGGCCTGCTCCAGTTAATGCCCAACCTTTAGAAA AGAGGCCAGGCAATGCAGGAAGCTTGCATCCTCCATTAGGAAACCCATCACTTGCAAAGT CATCCACACCAGCCTTTGCAATGGGAAACCTTTTGAATCCTGTGGCTAATACCCTTCTAC CTCAGCCCCCGCCAGGCAACCCAATATTTTCCAGTGCACTGCCGAGCGTCGGTTCCACAG TTGAGGATCTCAATTCACTGGCTGCACTGGCTCAACAAAGAAAAGGCAAGCCACCCAATG TTTCTTCTTTTGAACCGAAGAGTAGCTCTGAGGACACATTTTTCAAGCATAAATGCAGGT TTTGTGGCAAGGTGTTTGGTAGTGACAGTGCACTGCAGATTCACTTACGTTCTCATACAG GTGAAAGGCCATACAAATGCAACATATGTGGCAACCGCTTTTCCACTCGTGGTAACTTAA AGGTTCATTTTCAGCGTCATAAAGAGAAGTATCCACACATTCAGATGAACCCATACCCTG TCCCAGAGCATCTAGACAATATTCCAACAAGTACTGGCATTCCCTATGGTATGTCTATGC CCCCTGAAAAACCAGTGACCAGCTGGTTGGATAGTAAACCTGTTCTGTCCACTCTGACAT CCTCTGTTGGCATGTTACTTCCACCAACTATACCAAGTCTGCCTCCATTCATAAAAAAGG AAGAGAATAACTCACTGGCTATAAGCAGCCCTTCTCATTCTGCTAAAAGCGACTCAGGTC CTGCTGACACACCCATGAAGAATACAGATAGTGTGTTGGAGGAAGGTGAGAGCACAACCC TGCCTACCTCAAACGGAAAAGCTGAAGAAAACAACCAGTCCTCCAATTTATTATCTAACA TGAGCTCTGCGGTGGAGGGTACAATAGAGTACACCACCTCCAACAGTCCTCCGATGGCCA CTAACCCACTCATGCCTCTGATGTCAGAACAGTTCAAAGCTAAATTTCCTTTTGGGGGTC TTCTCGATCCTCTCCAAGGCTCAGAAACATCAAAACTTCAGCAACTTGTTGAGAACATAG ACAGGAAGGTGGCAGATCCCAATGAGTGTGTTATCTGTCATCGTATTCTTAGTTGCCAGA GTGCACTGAAAATGCACTACCGCACGCACACAGGGGAGAGGCCTTTCAAATGTAAAGTGT GTGGTCGTGCCTTCACCACCAAGGGCAACCTCAAGACTCATTACAGTGTCCATCGAGCTA TGCCGCCACTGAGAGTCCAGCATTCATGTCCTATTTGCCAGAAGAAGTTCACAAATGCTG TGGTGTTGCAGCAGCACATTCGCATGCACATGGGTGGCCAGATCCCCAACACCCCACTTC CTGACAATTATCCAGAATCCATGGGATCCGATGCTGGATCTTTTGATGAGAGAAACATTG ATGATCTTGACAACTTCTCTGATGACAACATGGAAGGAATTGAGGATGGACCAGACAGCA GCATTCCAGACACACCAAAGTCAGTTGATGCATCTCAAGACAGCCTCTGTTCATCTCCTA CTCTACATGAGTCATTTGGCATGGACGAGAGGATCCAGGAGAAGAGTGCCAACCATGGAG CAGGAGAGGAAGTGCAGTATGATCAAGGGAAATCAGTGGAGAACGGTTTAGTGGAAGGAG ACAGATTCACAAATGACTCCTCTTCACTGGGGGGTGACATAGAAAGCCAAAGTGCCGGAA GTCCAGCTGTCTCTGAATCTACCTCTTCCATGCAAGCTCCGTCACCCTCTAATGGTATAT TCCAACAACAAAAGTCTCCTAGTATGGAAGATAGGCAGCAAAGGGCATTGTCATTGGAGC ACATTAGTGCAAGTCTCATGCATTCTAATTCTGCCAGTCCTGGAGCTCTGGATCTTACTT CAGTTAACTCATCTAAAGATCCTATTAGCATGCTTTTCCCCTTCCGTGAGCGAGGCACCT TGAAAAATACAGCATGTGATATCTGTGGCAAGACGTTTGCCTGCCAGAGTGCCTTGGACA TCCATTACCGTAGCC/- ATACCAAAGAGAGACCATTTATTTGCACAGTATGCAACCGGGGCTTTTCCACCAAGGGGAACTTAAAGCAACATATGCTG ... - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None