Genomic Feature

hdb11

ID
ZDB-ALT-180207-13
Name
hdb11
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Maria Leptin Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 16: 42003597 - 42004416 (GRCz11) (1) Details
Nucleotide change
ATAACCGTAAAATTATGGATTTTTTACAGTGAATATATAACACCATTTTTTATCTTATTTTGTATAGTGAGAGTTTTTTTTACATAATTTAAATATTGAATATACAGTAAGATATAATATAATAATAATAATAATGTGTTATGTAACAATAATATTATAAAATAAAATATCCACCACTCCAATCATGGAGCAGTCCAGCAGACAAATTTCAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACTATTTTTTTATTGTAAATACATTTTAATAAAACTAATCATTCAAAATGAAAAGACTGCATTAAGATAAAACAAAAGATTGAGTAATATAAAAAAACACCAAAATAAACAATAATCACATATAAAAGTAGAAAGGGTGTATCAGGACTTGGGCCCCATGGCTGAGGTTGCCTAGGGTCCCCAATTCGCTAAATCCGCCCCTGCATATCTATAATAACTTTAAAGAATGACAGACTGACTTTTTTCCGCGTTTGTCATTATGTGAAGCTTTACTCACCTTGCCCTGTGTTCTCCAAGAGCTCCTCTGCTACTGCATTACACTTGATACCCCTTAAAATGTCCACTGTTACAGAAACCGCGTCAGATGTGAAAGTGTTGACCAATAAATCAACCAGATCTATCTCGTCTTTCAGCTTTTCGATTGTAGATTTTCGGACGCGCGGTTCCTGCTTCCGATCGCCCAGTCTGCTTTGAAACCTTCTTAGATTATCCGCCCCAATA/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
800 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
None
Sequences
Flanking Sequence
TGTCTTAAAATTCAGTGCACATAGTTTATGGCAAAGATTGTAGAAATTTGCTTGCTGTAGACCTATAAAACTGACTTCTTTTTCATAAGAAGAGAGTAATAAATAATTAATAGCAGGCAATATGTCCATTAAGCTATTTAGCCCAAGTCAAATGTTCGAAAATGAATAAATGTGTTCGATATTATAGACTAGAAGCTGACGATATGCACCGCATGCATGTCTAAAGGGGCGGATTTAACCAATAAGCGAGTTAAGCGGCCGCTTAGAGCCCCAGGTAATCTGGGGCCCCCAATAAATATCTAGAAGTGTAAATCATACCTATAAATTACACTGTAAAAAATACAGAAATTTACCATAAAATAACAGAGGTTGATTTATGGAAATTTACCAGAAATTTTTATCTAAGGGAACTACTGTAATTTAATGTTCGTTATTTTAACGTAATTTTATGTAATTTAATAGCCGTTATTTTATTTTTTCGGGCACCCCAACTACCAGAA
ATAACCGTAAAATTATGGATTTTTTACAGTGAATATATAACACCATTTTTTATCTTATTTTGTATAGTGAGAGTTTTTTTTACATAATTTAAATATTGAATATACAGTAAGATATAATATAATAATAATAATAATGTGTTATGTAACAATAATATTATAAAATAAAATATCCACCACTCCAATCATGGAGCAGTCCAGCAGACAAATTTCAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACTATTTTTTTATTGTAAATACATTTTAATAAAACTAATCATTCAAAATGAAAAGACTGCATTAAGATAAAACAAAAGATTGAGTAATATAAAAAAACACCAAAATAAACAATAATCACATATAAAAGTAGAAAGGGTGTATCAGGACTTGGGCCCCATGGCTGAGGTTGCCTAGGGTCCCCAATTCGCTAAATCCGCCCCTGCATATCTATAATAACTTTAAAGAATGACAGACTGACTTTTTTCCGCGTTTGTCATTATGTGAAGCTTTACTCACCTTGCCCTGTGTTCTCCAAGAGCTCCTCTGCTACTGCATTACACTTGATACCCCTTAAAATGTCCACTGTTACAGAAACCGCGTCAGATGTGAAAGTGTTGACCAATAAATCAACCAGATCTATCTCGTCTTTCAGCTTTTCGATTGTAGATTTTCGGACGCGCGGTTCCTGCTTCCGATCGCCCAGTCTGCTTTGAAACCTTCTTAGATTATCCGCCCCAATA/- TTACTTAAAGCGTCCTGAAGATGGTCCTTGATAGATTTGGCCATGTTTAGCTCAGGGCGCTGACTGAATGCCGAAGGTCA  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations