Nucleotide Blast Databases

       • ZFIN Genomic (DNA) (GENOMICDNA) All genomic DNA sequences in ZFIN. (Jan 17, 2017)
       • ZFIN RNA/cDNA (RNASEQUENCES) All RNA sequences in ZFIN.
             • ZFIN Genes With Expression (ZFINGENESWITHEXPRESSION) All ZFIN genes and RNAs with expression data. (Jan 17, 2017)
             • Ensembl ZFIN Transcripts (ZFINENSEMBLTSCRIPT) Ensembl ZFIN Transcripts (Sep 10, 2015)
       • ZFIN CRISPR Sequences (ZFIN_CRISPR) zfin crispr sequences (Jan 17, 2017)
       • ZFIN MicroRNA Sequences (ZFIN_MICRORNA) MicroRNA sequences in ZFIN.
             • miRNA Mature (ZFIN_MIRNA_MATURE) All Mature miRNA sequences in ZFIN.
             • miRNA Stem Loop (ZFIN_MIRNA_STEMLOOP) All Stem Loop miRNA sequences in ZFIN.
       • ZFIN Morpholino Sequences (ZFIN_MRPH) Morpholino sequences in ZFIN. (Jan 17, 2017)
       • ZFIN TALEN Sequences (ZFIN_TALEN) zfin talen sequences (Jan 17, 2017)
       • GenBank Zebrafish RNA (GENBANKZEBRAFISHRNA) All GenBank RNA sequences.
             • EST Zebrafish (GBK_EST_ZF) Subset of GenBank that contains zebrafish sequences from EST division. Zebrafish sequences are parsed from the EST divisions by examining the organism lines for entries "Danio rerio" (Aug 5, 2016)
             • GenBank Zebrafish mRNA (GBK_ZF_MRNA) All GenBank mRNA sequences. (Aug 5, 2016)
             • GenBank Zebrafish Other RNA (GBK_ZF_RNA) Contains RNA sequences from GenBank of type: precursor RNA, ribosomal RNA, small nuclear RNA and small cytoplasmic RNA (Aug 5, 2016)
       • GenBank Zebrafish DNA (GBK_ZF_DNA) Genbank Zebrafish DNA in ZFIN. (Aug 5, 2016)
       • HTG Zebrafish (GBK_HTG_ZF) Subset of GenBank that contains zebrafish High-throughput Genomic sequences (HTG). Zebrafish sequences are parsed from the HTG division by examining the organism line for entries "Danio rerio". (Aug 5, 2016)
       • GSS Zebrafish (GBK_GSS_ZF) Subset of GenBank that contains zebrafish Genome Survey Sequences (GSS). Zebrafish sequences are parsed from the GSS division by examining the organism line for entries "Danio rerio" (Aug 5, 2016)
       • PREVEGA (VEGA_TRANSCRIPT) Vega zebrafish transcripts that are associated with ZFIN zebrafish genes, before they become available at Vega. (Sep 19, 2016)

Protein Blast Databases

       • Zebrafish Proteins (ZFIN_ALL_AA) All non nucleotide sequences in ZFIN; including RefSeq and UniprotKB zebrafish sequences.
             • Vega Zebrafish Protein (VEGAPROTEIN_ZF) protein records from Vega (OTTDARPs) (Aug 4, 2016)