PUBLICATION
Data extraction, transformation, and dissemination through ZFIN
- Authors
- Howe, D.G., Frazer, K., Fashena, D., Ruzicka, L., Bradford, Y., Ramachandran, S., Ruef, B.J., Van Slyke, C., Singer, A., and Westerfield, M.
- ID
- ZDB-PUB-111212-1
- Date
- 2011
- Source
- Methods in cell biology 104: 311-325 (Chapter)
- Registered Authors
- Bradford, Yvonne, Fashena, David, Frazer, K., Howe, Doug, Ramachandran, Sridhar, Ruef, Barbara, Ruzicka, Leyla, Singer, Amy, Van Slyke, Ceri E., Westerfield, Monte
- Keywords
- zebrafish, model organism, database, nomenclature, standard expression, phenotype, transgenic, community wiki, antibody, curation, danio rerio, ZFIN
- MeSH Terms
-
- Animals
- Data Mining/methods*
- Databases, Genetic/standards*
- Information Dissemination/methods*
- Information Management/methods
- Information Management/standards
- Terminology as Topic
- Zebrafish/genetics*
- PubMed
- 21924170 Full text @ Meth. Cell. Biol.
Citation
Howe, D.G., Frazer, K., Fashena, D., Ruzicka, L., Bradford, Y., Ramachandran, S., Ruef, B.J., Van Slyke, C., Singer, A., and Westerfield, M. (2011) Data extraction, transformation, and dissemination through ZFIN. Methods in cell biology. 104:311-325.
Abstract
The publication of a research article is the beginning of the digital life of its associated data. In this article, we will present an overview of how data are incorporated into ZFIN, with a particular emphasis on helping researchers make their work accessible to online databases.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping