ZFIN ID: ZDB-LAB-990120-1
Baier Lab
PI/Director: Baier, Herwig
Co-PI / Senior
Wullimann, Mario F.
Contact Person: Cerny, Annegret
Email: hbaier@neuro.mpg.de
URL: http://www.neuro.mpg.de/baier
Address: Max Planck Institute of Neurobiology Department Genes –- Circuits -– Behavior Am Klopferspitz 18 82152 Martinsried near Munich Germany
Country: Germany
Phone: 011-49-8578-3200
Fax: 011-49-8578-3240
Line Designation: mpn

Show first 50 of 388 genomic features

Our current interests:
• Functional dissection of visual and visuomotor pathways at the cellular and synaptic scale.
• Neural basis of elementary cognitive processes, including decision-making, attention, memory and social affiliation.
• Innovation and refinement of optical, genetic and optogenetic methods.
• Machine learning-supported, kinematic analysis of behavior.
• Linking circuit architectures to behavioral adaptations.
• Development of a multimodal, high-resolution atlas of the zebrafish brain.
• Neuroethology and behavioral genetics of East African cichlids.

Foerster, Dominique Post-Doc Grätsch, Swantje Post-Doc Larsch, Johannes Post-Doc
Marquart, Gregory Post-Doc Shainer, Inbal Post-Doc Stemmer, Manuel Post-Doc
Bauer, Lisa Graduate Student Breitzler, Lukas Graduate Student Kappel, Johannes Graduate Student
Mearns, Duncan Graduate Student Parker, Ashley Graduate Student Schneider, Martin Graduate Student
Sherman, Shachar Graduate Student Al Kassar, Mariam Research Staff Donovan, Joseph Research Staff
Finger-Baier, Karin Research Staff Kühn, Enrico Research Staff Laurell, Eva Research Staff
Mokayes, Nouwar Research Staff Robbins, Trace Research Staff Slanchev, Krasimir Research Staff
Arnold-Ammer, Irene Technical Staff Cerny, Annegret Administrative Staff

Shainer, I., Kuehn, E., Laurell, E., Al Kassar, M., Mokayes, N., Sherman, S., Larsch, J., Kunst, M., Baier, H. (2023) A single-cell resolution gene expression atlas of the larval zebrafish brain. Science advances. 9:eade9909eade9909
Elazary, Y., Cheow, K., Cheng, R.K., Ghosh, R., Shainer, I., Wexler, Y., Crasta, K., Gothilf, Y., Jesuthasan, S.J. (2023) Glial cells expressing visual cycle genes are vital for photoreceptor survival in the zebrafish pineal gland. Journal of pineal research. 74(3):e12854
van der Plas, T.L., Tubiana, J., Le Goc, G., Migault, G., Kunst, M., Baier, H., Bormuth, V., Englitz, B., Debrégeas, G. (2023) Neural assemblies uncovered by generative modeling explain whole-brain activity statistics and reflect structural connectivity. eLIFE. 12:
Vettkötter, D., Schneider, M., Goulden, B.D., Dill, H., Liewald, J., Zeiler, S., Guldan, J., Ateş, Y.A., Watanabe, S., Gottschalk, A. (2022) Rapid and reversible optogenetic silencing of synaptic transmission by clustering of synaptic vesicles. Nature communications. 13:78277827
Bruckner, J.J., Stednitz, S.J., Grice, M.Z., Zaidan, D., Massaquoi, M.S., Larsch, J., Tallafuss, A., Guillemin, K., Washbourne, P., Eisen, J.S. (2022) The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons. PLoS Biology. 20:e3001838
Svara, F., Förster, D., Kubo, F., Januszewski, M., Dal Maschio, M., Schubert, P.J., Kornfeld, J., Wanner, A.A., Laurell, E., Denk, W., Baier, H. (2022) Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain. Nature Methods. 19(11):1357-1366
Kappel, J.M., Förster, D., Slangewal, K., Shainer, I., Svara, F., Donovan, J.C., Sherman, S., Januszewski, M., Baier, H., Larsch, J. (2022) Visual recognition of social signals by a tectothalamic neural circuit. Nature. 608(7921):146-152
Wullimann, M.F. (2022) The neuromeric/prosomeric model in teleost fish neurobiology. Brain, behavior and evolution. 97(6):336-360
Eugenin von Bernhardi, J., Biechl, D., Miek, L., Herget, U., Ryu, S., Wullimann, M.F. (2022) A versatile transcription factor: Multiple roles of orthopedia a (otpa) beyond its restricted localization in dopaminergic systems of developing and adult zebrafish (Danio rerio) brains. The Journal of comparative neurology. 530(14):2537-2561
Shainer, I., Stemmer, M. (2021) Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets. BMC Genomics. 22:661
Gerlach, G., Wullimann, M.F. (2021) Neural pathways of olfactory kin imprinting and kin recognition in zebrafish. Cell and tissue research. 383(1):273-287
Fernandes, A.M., Mearns, D.S., Donovan, J.C., Larsch, J., Helmbrecht, T.O., Kölsch, Y., Laurell, E., Kawakami, K., Dal Maschio, M., Baier, H. (2020) Neural circuitry for stimulus selection in the zebrafish visual system. Neuron. 109(5):805-822.e6
Kölsch, Y., Hahn, J., Sappington, A., Stemmer, M., Fernandes, A.M., Helmbrecht, T.O., Lele, S., Butrus, S., Laurell, E., Arnold-Ammer, I., Shekhar, K., Sanes, J.R., Baier, H. (2020) Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. Neuron. 109(4):645-662.e9
Barker, A.J., Helmbrecht, T.O., Grob, A.A., Baier, H. (2020) Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum. The Journal of comparative neurology. 529(9):2159-2175
Förster, D., Helmbrecht, T.O., Mearns, D.S., Jordan, L., Mokayes, N., Baier, H. (2020) Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey. eLIFE. 9:
Wu, Y., Dal Maschio, M., Kubo, F., Baier, H. (2020) An Optical Illusion Pinpoints an Essential Circuit Node for Global Motion Processing. Neuron. 108(4):722-734.e5
Pantoja, C., Larsch, J., Laurell, E., Marquart, G., Kunst, M., Baier, H. (2020) Rapid Effects of Selection on Brain-wide Activity and Behavior. Current biology : CB. 30(18):3647-3656.e3
Robles, E., Fields, N.P., Baier, H. (2020) The zebrafish visual system transmits dimming information via multiple segregated pathways. The Journal of comparative neurology. 529(3):539-552
Antinucci, P., Dumitrescu, A., Deleuze, C., Morley, H.J., Leung, K., Hagley, T., Kubo, F., Baier, H., Bianco, I.H., Wyart, C. (2020) A calibrated optogenetic toolbox of stable zebrafish opsin lines. eLIFE. 9:
Zuccarini, G., D'Atri, I., Cottone, E., Mackie, K., Shainer, I., Gothilf, Y., Provero, P., Bovolin, P., Merlo, G.R. (2019) Interference with the Cannabinoid Receptor CB1R Results in Miswiring of GnRH3 and AgRP1 Axons in Zebrafish Embryos. International Journal of Molecular Sciences. 21(1):
Mearns, D.S., Donovan, J.C., Fernandes, A.M., Semmelhack, J.L., Baier, H. (2019) Deconstructing Hunting Behavior Reveals a Tightly Coupled Stimulus-Response Loop. Current biology : CB. 30(1):54-69.e9
van Staden, C., de Brouwer, G., Botha, T.L., Finger-Baier, K., Brand, S.J., Wolmarans, D. (2019) Dopaminergic and serotonergic modulation of social reward appraisal in zebrafish (Danio rerio) under circumstances of motivational conflict: towards a screening test for anti-compulsive drug action. Behavioural brain research. 379:112393
Wullimann, M.F., Umeasalugo, K.E. (2019) Sonic hedgehog (shh) expression in zebrafish forebrain identifies the teleostean pallidal signaling center and shows preglomerular complex and posterior tubercular dopamine cells to arise from shh cells. The Journal of comparative neurology. 528(8):1321-1348
DeMarco, E., Xu, N., Baier, H., Robles, E. (2019) Neuron types in the zebrafish optic tectum labeled by an id2b transgene. The Journal of comparative neurology. 528(7):1173-1188
Marquart, G.D., Tabor, K.M., Bergeron, S.A., Briggman, K.L., Burgess, H.A. (2019) Prepontine non-giant neurons drive flexible escape behavior in zebrafish. PLoS Biology. 17:e3000480
Yashina, K., Tejero-Cantero, Á., Herz, A., Baier, H. (2019) Zebrafish Exploit Visual Cues and Geometric Relationships to Form a Spatial Memory. iScience. 19:119-134
Shainer, I., Michel, M., Marquart, G.D., Bhandiwad, A.A., Zmora, N., Ben-Moshe Livne, Z., Zohar, Y., Hazak, A., Mazon, Y., Förster, D., Hollander-Cohen, L., Cone, R.D., Burgess, H.A., Gothilf, Y. (2019) Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System. Current biology : CB. 29(12):2009-2019.e7
Kunst, M., Laurell, E., Mokayes, N., Kramer, A., Kubo, F., Fernandes, A.M., Förster, D., Dal Maschio, M., Baier, H. (2019) A Cellular-Resolution Atlas of the Larval Zebrafish Brain. Neuron. 103(1):21-38.e5
Kramer, A., Wu, Y., Baier, H., Kubo, F. (2019) Neuronal Architecture of a Visual Center that Processes Optic Flow. Neuron. 103(1):118-132.e7
Larsch, J., Pantoja, C. (2019) Learning: Complexities of Habituation in Escaping Zebrafish Larvae. Current biology : CB. 29:R292-R294
Baeuml, S.W., Biechl, D., Wullimann, M.F. (2019) Adult islet1 Expression Outlines Ventralized Derivatives Along Zebrafish Neuraxis. Frontiers in Neuroanatomy. 13:19
Tabor, K.M., Marquart, G.D., Hurt, C., Smith, T.S., Geoca, A.K., Bhandiwad, A.A., Subedi, A., Sinclair, J.L., Rose, H.M., Polys, N.F., Burgess, H.A. (2019) Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping. eLIFE. 8
Bernal Sierra, Y.A., Rost, B.R., Pofahl, M., Fernandes, A.M., Kopton, R.A., Moser, S., Holtkamp, D., Masala, N., Beed, P., Tukker, J.J., Oldani, S., Bönigk, W., Kohl, P., Baier, H., Schneider-Warme, F., Hegemann, P., Beck, H., Seifert, R., Schmitz, D. (2018) Potassium channel-based optogenetic silencing. Nature communications. 9:4611
Helmbrecht, T.O., Dal Maschio, M., Donovan, J.C., Koutsouli, S., Baier, H. (2018) Topography of a Visuomotor Transformation. Neuron. 100(6):1429-1445.e4
Larsch, J., Baier, H. (2018) Biological Motion as an Innate Perceptual Mechanism Driving Social Affiliation. Current biology : CB. 28(22):3523-3532.e4
Yakulov, T.A., Todkar, A.P., Slanchev, K., Wiegel, J., Bona, A., Groß, M., Scholz, A., Hess, I., Wurditsch, A., Grahammer, F., Huber, T.B., Lecaudey, V., Bork, T., Hochrein, J., Boerries, M., Leenders, J., de Tullio, P., Jouret, F., Kramer-Zucker, A., Walz, G. (2018) CXCL12 and MYC control energy metabolism to support adaptive responses after kidney injury. Nature communications. 9:3660
Förster, D., Kramer, A., Baier, H., Kubo, F. (2018) Optogenetic precision toolkit to reveal form, function and connectivity of single neurons. Methods (San Diego, Calif.). 150:42-48
Tabor, K.M., Marquart, G.D., Smith, T.S., Geoca, A.K., Bhandiwad, A.A., Subedi, A., Sinclair, J.L., Burgess, H.A. (2018) Brain-wide cellular resolution imaging of Cre transgenic zebrafish lines for functional circuit-mapping. ZFIN Direct Data Submission.
Gupta, T., Marquart, G.D., Horstick, E.J., Tabor, K.M., Pajevic, S., Burgess, H.A. (2018) Morphometric analysis and neuroanatomical mapping of the zebrafish brain. Methods (San Diego, Calif.). 150:49-62
Heffer, A., Marquart, G.D., Aquilina-Beck, A., Saleem, N., Burgess, H.A., Dawid, I.B. (2017) Generation and characterization of Kctd15 mutations in zebrafish. PLoS One. 12:e0189162
Freifeld, L., Odstrcil, I., Förster, D., Ramirez, A., Gagnon, J.A., Randlett, O., Costa, E.K., Asano, S., Celiker, O.T., Gao, R., Martin-Alarcon, D.A., Reginato, P., Dick, C., Chen, L., Schoppik, D., Engert, F., Baier, H., Boyden, E.S. (2017) Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proceedings of the National Academy of Sciences of the United States of America. 114(50):E10799-E10808
Köhler, A., Collymore, C., Finger-Baier, K., Geisler, R., Kaufmann, L., Pounder, K.C., Schulte-Merker, S., Valentim, A., Varga, Z.M., Weiss, J., Strähle, U. (2017) Report of Workshop on Euthanasia for Zebrafish-A Matter of Welfare and Science. Zebrafish. 14(6):547-551
Marquart, G.D., Tabor, K.M., Horstick, E.J., Brown, M., Geoca, A.K., Polys, N.F., Nogare, D.D., Burgess, H.A. (2017) High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization. GigaScience. 6:1-15
Förster, D., Dal Maschio, M., Laurell, E., Baier, H. (2017) An optogenetic toolbox for unbiased discovery of functionally connected cells in neural circuits. Nature communications. 8:116
Förster, D., Arnold-Ammer, I., Laurell, E., Barker, A.J., Fernandes, A.M., Finger-Baier, K., Filosa, A., Helmbrecht, T.O., Kölsch, Y., Kühn, E., Robles, E., Slanchev, K., Thiele, T.R., Baier, H., Kubo, F. (2017) Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools. Scientific Reports. 7:5230
Kuechlin, S., Schoels, M., Slanchev, K., Lassmann, S., Walz, G., Yakulov, T.A. (2017) EpCAM controls morphogenetic programs during zebrafish pronephros development. Biochemical and Biophysical Research Communications. 487(2):209-215
Dal Maschio, M., Donovan, J.C., Helmbrecht, T.O., Baier, H. (2017) Linking Neurons to Network Function and Behavior by Two-Photon Holographic Optogenetics and Volumetric Imaging. Neuron. 94:774-789.e5
Biechl, D., Tietje, K., Ryu, S., Grothe, B., Gerlach, G., Wullimann, M.F. (2017) Identification of accessory olfactory system and medial amygdala in the zebrafish. Scientific Reports. 7:44295
Richardson, R., Metzger, M., Knyphausen, P., Ramezani, T., Slanchev, K., Kraus, C., Schmelzer, E., Hammerschmidt, M. (2016) Re-epithelialization of cutaneous wounds in adult zebrafish uses a combination of mechanisms at play during wound closure in embryonic and adult mammals. Development (Cambridge, England). 143(12):2077-88
Filosa, A., Barker, A.J., Dal Maschio, M., Baier, H. (2016) Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum. Neuron. 90(3):596-608
Biechl, D., Dorigo, A., Köster, R.W., Grothe, B., Wullimann, M.F. (2016) Eppur Si Muove: Evidence for an External Granular Layer and Possibly Transit Amplification in the Teleostean Cerebellum. Frontiers in Neuroanatomy. 10:49
Biechl, D., Tietje, K., Gerlach, G., Wullimann, M.F. (2016) Crypt cells are involved in kin recognition in larval zebrafish. Scientific Reports. 6:24590
Hoffman, E.J., Turner, K.J., Fernandez, J.M., Cifuentes, D., Ghosh, M., Ijaz, S., Jain, R.A., Kubo, F., Bill, B.R., Baier, H., Granato, M., Barresi, M.J., Wilson, S.W., Rihel, J., State, M.W., Giraldez, A.J. (2016) Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2. Neuron. 89(4):725-33
Barber, D.M., Schönberger, M., Burgstaller, J., Levitz, J., Weaver, C.D., Isacoff, E.Y., Baier, H., Trauner, D. (2016) Optical control of neuronal activity using a light-operated GIRK channel opener (LOGO). Chemical science. 7:2347-2352
Donovan, J. (2016) Exploring behavioral circuits with holographic optogenetics and network imaging.. Ph.D. Thesis.
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.M., Higashijima, S., Burgess, H.A. (2015) A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in neural circuits. 9:78
Barker, A.J., Baier, H. (2015) Sensorimotor Decision Making in the Zebrafish Tectum. Current biology : CB. 25:2804-14
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.H., Higashijima, S., and Burgess, H.A. (2015) Enhancer Trap Transgenics. ZFIN Direct Data Submission.
Temizer, I., Donovan, J.C., Baier, H., Semmelhack, J.L. (2015) A Visual Pathway for Looming-Evoked Escape in Larval Zebrafish. Current biology : CB. 25(14):1823-34
Auer, T.O., Xiao, T., Bercier, V., Gebhardt, C., Duroure, K., Concordet, J.P., Wyart, C., Suster, M., Kawakami, K., Wittbrodt, J., Baier, H., Del Bene, F. (2015) Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3. eLIFE. 4
Epting, D., Slanchev, K., Boehlke, C., Hoff, S., Loges, N.T., Yasunaga, T., Indorf, L., Nestel, S., Lienkamp, S.S., Omran, H., Kuehn, E.W., Ronneberger, O., Walz, G., Kramer-Zucker, A. (2015) The Rac1 regulator ELMO controls basal body migration and docking in multiciliated cells through interaction with Ezrin. Development (Cambridge, England). 142:174-84
Semmelhack, J.L., Donovan, J.C., Thiele, T.R., Kuehn, E., Laurell, E., Baier, H. (2014) A dedicated visual pathway for prey detection in larval zebrafish. eLIFE. 4:299-307
Robles, E., Laurell, E., Baier, H. (2014) The Retinal Projectome Reveals Brain-Area-Specific Visual Representations Generated by Ganglion Cell Diversity. Current biology : CB. 24(18):2085-96
Schoetz, U., Deliolanis, N.C., Ng, D., Pauli, J., Resch-Genger, U., Kühn, E., Heuer, S., Beisker, W., Köster, R.W., Zitzelsberger, H., Caldwell, R.B. (2014) Usefulness of a Darwinian System in a Biotechnological Application: Evolution of Optical Window Fluorescent Protein Variants under Selective Pressure. PLoS One. 9:e107069
Thiele, T.R., Donovan, J.C., Baier, H. (2014) Descending Control of Swim Posture by a Midbrain Nucleus in Zebrafish. Neuron. 83(3):679-691
Jia, S., Muto, A., Orisme, W., Henson, H.E., Parupalli, C., Ju, B., Baier, H., and Taylor, M.R. (2014) Zebrafish Cacna1fa is required for cone photoreceptor function and synaptic ribbon formation. Human molecular genetics. 23(11):2981-94
Skugor, A., Slanchev, K., Torgersen, J.S., Tveiten, H., and Andersen, O. (2014) Conserved Mechanisms for Germ Cell-Specific Localization of nanos3 Transcripts in Teleost Species with Aquaculture Significance. Marine biotechnology (New York, N.Y.). 16(3):256-64
Herget, U., Wolf, A., Wullimann, M.F., and Ryu, S. (2014) Molecular neuroanatomy and chemoarchitecture of the neurosecretory preoptic-hypothalamic area in zebrafish larvae. The Journal of comparative neurology. 522(7):1542-64
Kubo, F., Hablitzel, B., Dal Maschio, M., Driever, W., Baier, H., Arrenberg, A.B. (2014) Functional architecture of an optic flow-responsive area that drives horizontal eye movements in zebrafish. Neuron. 81:1344-59
Gonçalves, P.J., Arrenberg, A.B., Hablitzel, B., Baier, H., Machens, C.K. (2014) Optogenetic perturbations reveal the dynamics of an oculomotor integrator. Frontiers in neural circuits. 8:10
Wullimann M.F. (2013) Ancestry of basal ganglia circuits: new evidence in teleosts. The Journal of comparative neurology. 522(9):2013-2018
Muto, A., Taylor, M.R., Suzawa, M., Korenbrot, J.I., and Baier, H. (2013) Glucocorticoid receptor activity regulates light adaptation in the zebrafish retina. Frontiers in neural circuits. 7:145
Kim, Y.H., Epting, D., Slanchev, K., Engel, C., Walz, G., and Kramer-Zucker, A. (2013) A Complex of BBS1 and NPHP7 Is Required for Cilia Motility in Zebrafish. PLoS One. 8(9):e72549
Gebhardt, C., Baier, H., and Bene, F.D. (2013) Direction selectivity in the visual system of the zebrafish larva. Frontiers in neural circuits. 7:111
Richardson, R., Slanchev, K., Kraus, C., Knyphausen, P., Eming, S., and Hammerschmidt, M. (2013) Adult zebrafish as a model system for cutaneous wound healing research. The Journal of investigative dermatology. 133(6):1655-65
Ziv, L., Muto, A., Schoonheim, P.J., Meijsing, S.H., Strasser, D., Ingraham, H.A., Schaaf, M.J., Yamamoto, K.R., and Baier, H. (2013) An affective disorder in zebrafish with mutation of the glucocorticoid receptor. Molecular psychiatry. 18(6):681-91
Barker, A.J., and Baier, H. (2013) SINs and SOMs: neural microcircuits for size tuning in the zebrafish and mouse visual pathway. Frontiers in neural circuits. 7:89
Grisham, R.C., Kindt, K., Finger-Baier, K., Schmid, B., and Nicolson, T. (2013) Mutations in ap1b1 Cause Mistargeting of the Na(+)/K(+)-ATPase Pump in Sensory Hair Cells. PLoS One. 8(4):e60866
Robles, E., Filosa, A., and Baier, H. (2013) Precise lamination of retinal axons generates multiple parallel input pathways in the tectum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(11):5027-5039
Kress, S., and Wullimann, M.F. (2012) Correlated basal expression of immediate early gene egr1 and tyrosine hydroxylase in zebrafish brain and downregulation in olfactory bulb after transitory olfactory deprivation. Journal of chemical neuroanatomy. 46(1-2):51-66
Griffiths, B.B., Schoonheim, P.J., Ziv, L., Voelker, L., Baier, H., and Gahtan, E. (2012) A zebrafish model of glucocorticoid resistance shows serotonergic modulation of the stress response. Frontiers in behavioral neuroscience. 6:68
Akerboom, J., Chen, T.W., Wardill, T.J., Tian, L., Marvin, J.S., Mutlu, S., Calderón, N.C., Esposti, F., Borghuis, B.G., Sun, X.R., Gordus, A., Orger, M.B., Portugues, R., Engert, F., Macklin, J.J., Filosa, A., Aggarwal, A., Kerr, R.A., Takagi, R., Kracun, S., Shigetomi, E., Khakh, B.S., Baier, H., Lagnado, L., Wang, S.S., Bargmann, C.I., Kimmel, B.E., Jayaraman, V., Svoboda, K., Kim, D.S., Schreiter, E.R., and Looger, L.L. (2012) Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(40):13819-13840
Robles, E., and Baier, H. (2012) Assembly of synaptic laminae by axon guidance molecules. Current opinion in neurobiology. 22(5):799-804
Warp, E., Agarwal, G., Wyart, C., Friedmann, D., Oldfield, C.S., Conner, A., Del Bene, F., Arrenberg, A.B., Baier, H., and Isacoff, E.Y. (2012) Emergence of Patterned Activity in the Developing Zebrafish Spinal Cord. Current biology : CB. 22(2):93-102
Miri, A., Daie, K., Arrenberg, A.B., Baier, H., Aksay, E., and Tank, D.W. (2011) Spatial gradients and multidimensional dynamics in a neural integrator circuit. Nature Neuroscience. 14(9):1150-9
Slanchev, K., Pütz, M., Schmitt, A., Kramer-Zucker, A., and Walz, G. (2011) Nephrocystin-4 is required for pronephric duct-dependent cloaca formation in zebrafish. Human molecular genetics. 20(16):3119-28
Xiao, T., Staub, W., Robles, E., Gosse, N.J., Cole, G.J., and Baier, H. (2011) Assembly of Lamina-Specific Neuronal Connections by Slit Bound to Type IV Collagen. Cell. 146(1):164-176
Nevin, L.M., Xiao, T., Staub, W., and Baier, H. (2011) Topoisomerase II{beta} is required for lamina-specific targeting of retinal ganglion cell axons and dendrites. Development (Cambridge, England). 138(12):2457-2465
Wullimann, M.F., Mueller, T., Distel, M., Babaryka, A., Grothe, B., and Köster, R.W. (2011) The long adventurous journey of rhombic lip cells in jawed vertebrates: a comparative developmental analysis. Frontiers in Neuroanatomy. 5:27
Robles, E., Smith, S.J., and Baier, H. (2011) Characterization of genetically targeted neuron types in the zebrafish optic tectum. Frontiers in neural circuits. 5:1
Yamamoto, K., Ruuskanen, J.O., Wullimann, M.F., and Vernier, P. (2011) Differential expression of dopaminergic cell markers in the adult zebrafish forebrain. The Journal of comparative neurology. 519(3):576-598
Arrenberg, A.B., Stainier, D.Y., Baier, H., and Huisken, J. (2010) Optogenetic control of cardiac function. Science (New York, N.Y.). 330(6006):971-974
Del Bene, F., Wyart, C., Robles, E., Tran, A., Looger, L., Scott, E.K., Isacoff, E.Y., and Baier, H. (2010) Filtering of visual information in the tectum by an identified neural circuit. Science (New York, N.Y.). 330(6004):669-673
Nevin, L.M., Robles, E., Baier, H., and Scott, E.K. (2010) Focusing on optic tectum circuitry through the lens of genetics. BMC Biology. 8:126
Volkmann, K., Chen, Y.Y., Harris, M.P., Wullimann, M.F., and Köster, R.W. (2010) The zebrafish cerebellar upper rhombic lip generates tegmental hindbrain nuclei by long-distance migration in an evolutionary conserved manner. The Journal of comparative neurology. 518(14):2794-2817
Neumann-Haefelin, E., Kramer-Zucker, A., Slanchev, K., Hartleben, B., Noutsou, F., Martin, K., Wanner, N., Ritter, A., Gödel, M., Pagel, P., Fu, X., Müller, A., Baumeister, R., Walz, G., and Huber, T.B. (2010) A Model organism approach: Defining the role of Neph proteins as regulators of neuron and kidney morphogenesis. Human molecular genetics. 19(12):2347-2359
Schoonheim, P.J., Arrenberg, A.B., Del Bene, F., and Baier, H. (2010) Optogenetic localization and genetic perturbation of saccade-generating neurons in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30(20):7111-7120
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