ZFIN Gene: opn1sw1

ZFIN ID: ZDB-GENE-991109-25

ZFIN ID: ZDB-GENE-991109-25

Gene Name:

opsin 1 (cone pigments), short-wave-sensitive 1

Gene Symbol:

opn1sw1

Sequence Ontology ID :

SO:0001217

Previous Names:

SWS1 (1), uvops, zfuv

Location:

Chr: 4 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Predicted to have G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. ...

GENE EXPRESSION
All Expression Data:	63 figures from 47 publications
Directly Submitted Expression Data:	7 figures (2 images) from Thisse et al., 2004 [MGC:73050]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
	brain epiphysis eye fin gill gut heart hypophysis integument liver muscle photoreceptor cell retina ventral region retina retinal cone cell photoreceptor outer segment retinal cone cell retinal outer nuclear layer retinal photoreceptor layer UV sensitive photoreceptor cell retinal photoreceptor layer testis unspecified UV sensitive photoreceptor cell photoreceptor outer segment UV sensitive photoreceptor cell whole organism
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Targeting reagents:

MO1-opn1sw1 (1)

PHENOTYPE

Data:	Fig. 9 from Yoshimatsu et al., 2014
Observed in:	horizontal cell synapse

DISEASE ASSOCIATED WITH opn1sw1 HUMAN ORTHOLOG

Disease Ontology Term	OMIM Term	OMIM Phenotype ID
blue color blindness	Colorblindness, tritan	190900

DISEASE ASSOCIATED WITH opn1sw1 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	G protein-coupled receptor signaling pathway (more)
Cellular Component	integral component of membrane (more)
Molecular Function	G protein-coupled receptor activity (more)

GO Terms (all 14)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR000276 (1) InterPro:IPR001521 (1) InterPro:IPR001760 (1) InterPro:IPR017452 (1) InterPro:IPR027430 (1)	PROSITE:PS00237 (1) PROSITE:PS00238 (1) PROSITE:PS50262 (1)	Pfam:PF00001 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	opn1sw1-201 (1)	1777	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION

INTERACTIONS AND PATHWAYS

ANTIBODIES

Ab1-opn1sw1 (1)

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM opn1sw1

MARKER RELATIONSHIPS

opn1sw1 Contained in:	[BAC] CH211-266A5 (1) (order this)
opn1sw1 Encodes:	[cDNA] MGC:73050 (1) (order this), MGC:85903 (1) (order this), MGC:173963 (1) (order this)
opn1sw1 Has Artifact:	[cDNA] MGC:103666 (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_131319 (1)	1779 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX465210 (1)	171708 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q6NW86 (1)	336 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:8194 (1)

Sequence Information (all 30)

OTHER opn1sw1 GENE PAGES

Alliance (1)

Gene:30582 (1)

VEGA:OTTDARG00000007804 (1)

Ensembl(GRCz11):ENSDARG00000045677 (2)

ORTHOLOGY for opn1sw1 ( Chr: 4 )

CITATIONS (120)

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