ZFIN ID: ZDB-GENE-991109-25
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Gene Name: opsin 1 (cone pigments), short-wave-sensitive 1
Gene Symbol: opn1sw1
Sequence Ontology ID : SO:0000704

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Previous Names: SWS1 (1), uvops, zfuv

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have G protein-coupled photoreceptor activity; predicted to be involved in G protein-coupled receptor signaling pathway, cellular response to light stimulus, and phototransduction;  ...
GENE EXPRESSION
All Expression Data: 62 figures from 46 publications
Directly Submitted Expression Data: 7 figures (2 images) from Thisse et al., 2004 [MGC:73050]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: Fig. 9 from Yoshimatsu et al., 2014
Observed in:
DISEASE ASSOCIATED WITH opn1sw1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
blue color blindness Colorblindness, tritan 190900
DISEASE ASSOCIATED WITH opn1sw1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process G protein-coupled receptor signaling pathway (more)
Cellular Component integral component of membrane (more)
Molecular Function G protein-coupled receptor activity (more)
GO Terms (all 12)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000276 (1)
  • InterPro:IPR001521 (1)
  • InterPro:IPR001760 (1)
  • InterPro:IPR017452 (1)
  • InterPro:IPR027430 (1)
    		•
  • PROSITE:PS00237 (1)
  • PROSITE:PS00238 (1)
  • PROSITE:PS50262 (1)
    		•
  • Pfam:PF00001 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA opn1sw1-201 (1) 1777
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM opn1sw1
    MARKER RELATIONSHIPS
    opn1sw1Contained in: [BAC] CH211-266A5 (1) (order this)
    opn1sw1Encodes: [cDNA] MGC:73050 (1) (order this), MGC:85903 (1) (order this), MGC:173963 (1) (order this)
    opn1sw1Has Artifact: [cDNA] MGC:103666 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131319 (1) 1779bp
    Select Tool
    Genomic GenBank:BX465210 (1) 171708bp
    Select Tool
    Polypeptide UniProtKB:Q6NW86 (1) 336aa
    Select Tool
    Sequence Clusters UniGene:8194 (1)
    Sequence Information (all 30)
    OTHER opn1sw1 GENE PAGES
  • Alliance (1)
  • Gene:30582 (1)
  • VEGA:OTTDARG00000007804 (1)
  • Ensembl(GRCz11):ENSDARG00000045677 (2)
    • ORTHOLOGY for opn1sw1 (Chr: 4)
    CITATIONS (118)