ZFIN ID: ZDB-GENE-990715-2
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Gene Symbol: sema3d
Sequence Ontology ID : SO:0000704

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Previous Names: sema2, sema3D (1), semaZ2 (1)

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have chemorepellent activity, neuropilin binding activity, and semaphorin receptor binding activity; involved in several processes, including ameboidal-type cell migration, animal organ  ...
GENE EXPRESSION
All Expression Data: 43 figures from 20 publications
Directly Submitted Expression Data: 7 figures (23 images) from Thisse et al., 2005 [eu640]
  10 figures (32 images) from Rauch et al., 2003 [fb95a06]
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la020551Tg Transgenic Insertion Unknown Unknown DNA
mu268 Small Deletion Unknown Unknown CRISPR
sa1661 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15069 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19196 Point Mutation Unknown Premature Stop ENU
    sa28980 Point Mutation Unknown Splice Site ENU
    sa30702 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36576 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43051 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44882 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: 9 figures from 4 publications
    Observed in:
    DISEASE ASSOCIATED WITH sema3d HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sema3d VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process enteric nervous system development (more)
    Cellular Component extracellular region (more)
    Molecular Function neuropilin binding (more)
    GO Terms (all 27)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • InterPro:IPR036179 (1)
  • InterPro:IPR036352 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF01403 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema3d-001 (1) 2814
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sema3d
    MARKER RELATIONSHIPS
    sema3dContained in: [BAC] CH73-91H12 (1) (order this)
    [Fosmid] CH1073-181J18 (1) (order this), CH1073-455M18 (1) (order this)
    sema3dEncodes: [EST] eu640 (1), fb95a06 (1) (order this)
    [cDNA] MGC:193649 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131048 (1) 2879bp
    Genomic GenBank:CU855784 (1) 56005bp
    Select Tool
    Polypeptide UniProtKB:A0A0B5JFC0 (1) 764aa
    Sequence Clusters UniGene:77612 (1)
    Sequence Information (all 25)
    OTHER sema3d GENE PAGES
  • Alliance (1)
  • Gene:30250 (1)
  • VEGA:OTTDARG00000032427 (1)
  • Ensembl(GRCz11):ENSDARG00000017369 (2)
  • ORTHOLOGY for sema3d (Chr: 18)
    CITATIONS (60)