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ZIRC
ZFIN ID: ZDB-GENE-990715-10
Gene Name: v-ski avian sarcoma viral oncogene homolog b
Gene Symbol: skib
Sequence Ontology ID : SO:0000704

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Previous Names: skiB, fc17g02, wu:fc17g02 (1), wu:fk79g04

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have SMAD binding activity. Involved in cartilage development; dorsal/ventral pattern formation; and heart looping. Localizes to the nucleus. Used to study craniosynostosis. Orthologous  ...
GENE EXPRESSION
All Expression Data: Fig. 2 from Asakawa et al., 2008
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010625Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la010824Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la011985Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la017804Tg Transgenic Insertion Unknown Unknown DNA
    nk15aEt Transgenic Insertion Unknown Unknown DNA
    sa9865 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41845 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH skib HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    craniosynostosis Shprintzen-Goldberg syndrome 182212
    DISEASE ASSOCIATED WITH skib VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    craniosynostosis WT + MO1-skib standard conditions Doyle et al., 2012
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process dorsal/ventral pattern formation (more)
    Cellular Component nucleus (more)
    Molecular Function SMAD binding (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA skib-201 (1) 3313
    skib-202 (1) 771
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM skib No data available
    MARKER RELATIONSHIPS
    skibContained in: [BAC] DKEY-156A5 (1) (order this), DKEY-183J2 (1) (order this)
    skibEncodes: [EST] fc17g02 (1), fk79g04 (1)
    skibHas Artifact: [EST] fc87g11
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_130938 (1) 3316bp
    Genomic GenBank:CR933820 (1) 230267bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q9YI02 (1) 695aa
    Sequence Clusters UniGene:3980 (1)
    Sequence Information (all 16)
    ORTHOLOGY for skib (Chr: 11)
    CITATIONS (24)