ZFIN ID: ZDB-GENE-990604-41
Gene Name: opsin 1 (cone pigments), long-wave-sensitive, 1
Gene Symbol: opn1lw1
Sequence Ontology ID : SO:0000704

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Previous Names: LWS-1 (1), LC opsin (1), rdops, red-sensitive opsin (1), zfred

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have G protein-coupled photoreceptor activity; involved in photoperiodism; predicted to localize to the integral component of plasma membrane and photoreceptor outer segment; orthologous  ...
GENE EXPRESSION
All Expression Data: 46 figures from 31 publications
Directly Submitted Expression Data: 7 figures (5 images) from Thisse et al., 2004 [MGC:73027]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH opn1lw1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
blue cone monochromacy Blue cone monochromacy 303700
red color blindness Colorblindness, protan 303900
DISEASE ASSOCIATED WITH opn1lw1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process photoperiodism (more)
Cellular Component integral component of membrane (more)
Molecular Function G protein-coupled receptor activity (more)
GO Terms (all 14)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000276 (1)
  • InterPro:IPR000378 (1)
  • InterPro:IPR001760 (1)
  • InterPro:IPR017452 (1)
  • InterPro:IPR027430 (1)
  • PROSITE:PS00237 (1)
  • PROSITE:PS00238 (1)
  • PROSITE:PS50262 (1)
  • Pfam:PF00001 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA opn1lw1-002 (1) 127
    mRNA opn1lw1-201 (1) 1699
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM opn1lw1
    MARKER RELATIONSHIPS
    opn1lw1Contained in: [BAC] DKEY-13A21 (order this), DKEY-245F22 (1) (order this)
    opn1lw1Encodes: [cDNA] MGC:73027 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131175 (1) 1725bp
    Genomic GenBank:AL844847 235174bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0N9N7J4 (1) 357aa
    Sequence Clusters UniGene:81279 (1)
    Sequence Information (all 26)
    OTHER opn1lw1 GENE PAGES
  • Alliance (1)
  • Gene:30413 (1)
  • VEGA:OTTDARG00000023780 (1)
  • ORTHOLOGY for opn1lw1 (Chr: 11)
    CITATIONS (94)