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General Information
ZIRC
ZFIN ID: ZDB-GENE-990415-205
Gene Name: visual system homeobox 1 homolog, chx10-like
Gene Symbol: vsx1
Sequence Ontology ID : SO:0000704

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Previous Name: etID309864.17 (1)

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits chromatin binding activity and transcription regulatory region DNA binding activity. Involved in several processes, including negative regulation of axial mesodermal cell fate specification;  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa101 Point Mutation Unknown Unknown ENU
Targeting reagents:
DISEASE ASSOCIATED WITH vsx1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
keratoconus Keratoconus 1 148300
?Craniofacial anomalies and anterior segment dysgenesis syndrome 614195
DISEASE ASSOCIATED WITH vsx1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process negative regulation of transcription, DNA-templated (more)
Cellular Component nucleus (more)
Molecular Function chromatin binding (more)
GO Terms (all 17)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA vsx1-202 (1) 1582
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIES
PLASMIDSNo data available
CONSTRUCTS WITH SEQUENCES FROM vsx1
MARKER RELATIONSHIPS
vsx1Contained in: [BAC] CH211-67N1 (1) (order this)
vsx1Encodes: [cDNA] MGC:73233 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_131333 (1) 1587bp
Genomic GenBank:AL929290 (1) 168517bp
Select Tool
Polypeptide UniProtKB:F1QTW3 (1) 344aa
Sequence Clusters UniGene:558 (1)
Sequence Information (all 16)
ORTHOLOGY for vsx1 (Chr: 17)
CITATIONS (60)