ZFIN ID: ZDB-GENE-990415-168
Gene Name: netrin 1b
Gene Symbol: ntn1b
Sequence Ontology ID : SO:0000704

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Previous Names: net1 (1), ntn1, etID309922.3 (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 25 figures from 18 publications
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 4 (96.0h-120.0h)
  brain, central nervous system, diencephalon, floor plate (all 23) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2087 Point Mutation Unknown Premature Stop ENU
Targeting reagents: MO1-ntn1b (1), MO2-ntn1b (1), MO3-ntn1b (1)
PHENOTYPE
Data: Fig. 7 from Zhang et al., 2012
Observed in: anterior commissure axon extension, anterior commissure morphogenesis, supraoptic tract axon extension
DISEASE ASSOCIATED WITH ntn1b HUMAN ORTHOLOGNo data available
GENE ONTOLOGY
Ontology GO Term
Biological Process anterior commissure morphogenesis (more)
Cellular Component extracellular region (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001134 (1)
  • InterPro:IPR002049 (1)
  • InterPro:IPR008211 (1)
  • InterPro:IPR008979 (1)
  • InterPro:IPR008993 (1)
  • InterPro:IPR018933 (1)
  • PROSITE:PS01248 (1)
  • PROSITE:PS50027 (1)
  • PROSITE:PS50189 (1)
  • PROSITE:PS51117 (1)
  • Pfam:PF00053 (1)
  • Pfam:PF00055 (1)
  • Pfam:PF01759 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ntn1b-001 (1) 1809
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ntn1b
    Tg(ntn1b:GFP)
    MARKER RELATIONSHIPS
    ntn1bContained in: [BAC] DKEYP-21H4 (1)
    ntn1bEncodes: [cDNA] MGC:194828 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_130998 (1) 1809bp
    Genomic GenBank:BX120006 (1) 196854bp
    Select Tool
    Polypeptide UniProtKB:B3DJ84 (1) 602aa
    Sequence Clusters UniGene:75773 (1)
    Sequence Information (all 24)
    OTHER ntn1b GENE PAGES
  • Alliance (1)
  • Gene:30192 (1)
  • VEGA:OTTDARG00000019852 (1)
  • Ensembl(GRCz10):ENSDARG00000022531 (1)
  • ORTHOLOGY for ntn1b (Chr: 3)
    CITATIONS (56)