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ZIRC
ZFIN ID: ZDB-GENE-990415-138
Gene Name: LIM domain binding 1a
Gene Symbol: ldb1a
Sequence Ontology ID : SO:0001217

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Previous Name: ldb4 (1)

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits LIM domain binding activity and protein dimerization activity. Predicted to be involved in multicellular organism development; negative regulation of transcription by RNA polymerase II; and  ...
GENE EXPRESSION
All Expression Data: 5 figures from 5 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:114025]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ldb1a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ldb1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription by RNA polymerase II (more)
Cellular Component nucleus (more)
Molecular Function LIM domain binding (more)
GO Terms (all 11)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR029005 (1)
  • InterPro:IPR030167 (1)
  • InterPro:IPR041363 (1)
  • Pfam:PF01803 (1)
  • Pfam:PF17916 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA ldb1a-003 (1) 419
    mRNA ldb1a-201 (1) 2276
    ldb1a-203 (1) 2986
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ldb1a No data available
    MARKER RELATIONSHIPS
    ldb1a Contained in: [BAC] CH73-19J14 (1) (order this)
    ldb1a Encodes: [cDNA] MGC:114025 (1) (order this), MGC:192029 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131316 (1) 1779 bp
    Genomic GenBank:CU640488 (1) 91743 bp
    Select Tool
    Polypeptide UniProtKB:A0A0G2KIT5 (1) 411 aa
    Sequence Clusters UniGene:27007 (1)
    Sequence Information (all 67)
    OTHER ldb1a GENE PAGES
  • Alliance (1)
  • Gene:30579 (1)
  • VEGA:OTTDARG00000029686 (1)
  • ORTHOLOGY for ldb1a ( Chr: 13 )
    CITATIONS (29)