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ZIRC
ZFIN ID: ZDB-GENE-990415-137
Gene Name: LIM domain binding 2b
Gene Symbol: ldb2b
Sequence Ontology ID : SO:0001217

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Previous Names: ldb2l, ldb3 (1), wu:fd16f11, zgc:92548

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have LIM domain binding activity and RNA polymerase II activating transcription factor binding activity. Predicted to be involved in multicellular organism development; negative  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu533]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ldb2b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ldb2b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription by RNA polymerase II (more)
Cellular Component nucleus (more)
Molecular Function LIM domain binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR029005 (1)
  • InterPro:IPR030174 (1)
  • InterPro:IPR041363 (1)
  • Pfam:PF01803 (1)
  • Pfam:PF17916 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ldb2b-201 (1) 4581
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ldb2b No data available
    MARKER RELATIONSHIPS
    ldb2b Contained in: [BAC] DKEY-92J12 (1) (order this)
    ldb2b Contains: [SNP] rs3727537 (1), rs3727538 (1)
    ldb2b Encodes: [EST] eu533 (1), fd16f11 (1)
    [cDNA] MGC:92548 (1), MGC:191656 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131315 (1) 4588 bp
    Genomic GenBank:BX908795 (1) 142468 bp
    Select Tool
    Polypeptide UniProtKB:O73714 (1) 384 aa
    Sequence Clusters UniGene:75824 (1)
    Sequence Information (all 24)
    ORTHOLOGY for ldb2b ( Chr: 1 )
    CITATIONS (22)