ZFIN ID: ZDB-GENE-990415-135
Gene Name: LIM-domain binding 1b
Gene Symbol: ldb1b    Nomenclature History

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Previous Name: ldb1 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have LIM domain binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Is expressed in blood island; fin bud; lateral mesoderm; neural tube; and tail bud.
Genome Resources: Alliance (1),  Gene:30576 (1),  Ensembl(GRCz11):ENSDARG00000103158 (1)
GENE EXPRESSION
All Expression Data: Fig. 3 from Toyama et al., 1998
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-ldb1b N/A 1
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ldb1b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ldb1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription by RNA polymerase II (more)
Cellular Component nucleus (more)
Molecular Function LIM domain binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Family IPR029005 LIM-domain binding protein/SEUSS
Family IPR030167 LIM domain-binding protein 1
Domain IPR041363 LIM interaction domain
TRANSCRIPTS No data available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ldb1b No data available
MARKER RELATIONSHIPS
ldb1b Encodes: [cDNA] MGC:123160 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_131313 (1) 2133 bp
Polypeptide UniProtKB:Q2YDQ6 (1) 374 aa
Sequence Clusters UniGene:156522 (1)
Sequence Information (all 21)
ORTHOLOGY for ldb1b ( Chr: 11 )
CITATIONS (14)