ZFIN ID: ZDB-GENE-990415-104
Gene Name: homeobox B3a
Gene Symbol: hoxb3a
Sequence Ontology ID : SO:0000704

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Previous Names: hoxb3, id:ibd3053 (1), wu:fc33f11, Z-92, zgc:111819

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription factor activity and RNA polymerase II proximal promoter sequence-specific DNA binding activity; predicted to be involved in several processes,  ...
GENE EXPRESSION
All Expression Data: 38 figures from 28 publications
Directly Submitted Expression Data: 2 figures (2 images) from Kudoh et al., 2001 [ibd3053]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 4 (96.0h-120.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011402Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la024019Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la024020Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la024021Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la024023Tg Transgenic Insertion Unknown Unknown DNA
    la024024Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17382 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxb3a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxb3a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001827 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • InterPro:IPR025281 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00032 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF13293 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxb3a-201 (1) 3411
    hoxb3a-202 (1) 593
    hoxb3a-203 (1) 539
    hoxb3a-204 (1) 1764
    ottdart00000001814 (1) 2771
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxb3a
    MARKER RELATIONSHIPS
    hoxb3aContained in: [BAC] CH211-72A16 (1) (order this), DKEY-178D9 (1) (order this)
    [PAC] BUSM1-254O17 (2) (order this)
    hoxb3aEncodes: [EST] fc33f11 (1), ibd3053 (1) (order this)
    [cDNA] MGC:111819 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131117 (1) 2107bp
    Genomic GenBank:BX927395 (1) 152987bp
    Select Tool
    Polypeptide UniProtKB:O42368 (1) 417aa
    Sequence Clusters UniGene:132502 (1)
    Sequence Information (all 46)
    OTHER hoxb3a GENE PAGES
  • Alliance (1)
  • Gene:30339 (1)
  • VEGA:OTTDARG00000001700 (1)
  • VEGA:OTTDARG00000019760 (1)
  • Ensembl(GRCz11):ENSDARG00000029263 (2)
  • ORTHOLOGY for hoxb3a (Chr: 3)
    CITATIONS (83)