ZFIN ID: ZDB-GENE-980526-466
Gene Name: SRY (sex determining region Y)-box 11b
Gene Symbol: sox11b
Sequence Ontology ID : SO:0000704

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Previous Names: etID55462.20 (1), fc90d10, wu:fb53e02 (1), wu:fc90d10 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription factor activity, RNA polymerase II-specific; involved in several processes, including animal organ development, dorsal/ventral pattern formation,  ...
GENE EXPRESSION
All Expression Data: 19 figures from 10 publications
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37063 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 4 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH sox11b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal dominant non-syndromic intellectual disability 27 Mental retardation, autosomal dominant 27 615866
    DISEASE ASSOCIATED WITH sox11b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process dorsal/ventral pattern formation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR017386 (1)
  • InterPro:IPR029551 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sox11b-201 (1) 2699
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sox11b
    MARKER RELATIONSHIPS
    sox11bContained in: [BAC] DKEY-227H16 (1) (order this)
    sox11bEncodes: [EST] fb53e02 (1), fc90d10 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131337 (1) 2666bp
    Genomic GenBank:BX248324 (1) 209057bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5TZG4 (1) 368aa
    Sequence Clusters UniGene:77148 (1)
    Sequence Information (all 19)
    OTHER sox11b GENE PAGES
  • Alliance (1)
  • Gene:30603 (1)
  • VEGA:OTTDARG00000005704 (1)
  • Ensembl(GRCz11):ENSDARG00000095743 (1)
  • ORTHOLOGY for sox11b (Chr: 20)
    CITATIONS (46)