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ZIRC
ZFIN ID: ZDB-GENE-980526-466
Gene Name: SRY-box transcription factor 11b
Gene Symbol: sox11b
Sequence Ontology ID : SO:0001217

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Previous Names: etID55462.20 (1), fc90d10, wu:fb53e02 (1), wu:fc90d10 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in several processes, including camera-type eye development; negative regulation of smoothened  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37063 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH sox11b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    autosomal dominant non-syndromic intellectual disability 27 Coffin-Siris syndrome 9 615866
    DISEASE ASSOCIATED WITH sox11b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process dorsal/ventral pattern formation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 17)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sox11b-201 (1) 2699
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    MARKER RELATIONSHIPS
    sox11b Contained in: [BAC] DKEY-227H16 (1) (order this)
    sox11b Encodes: [EST] fb53e02 (1), fc90d10 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131337 (1) 2666 bp
    Genomic GenBank:BX248324 (1) 209057 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5TZG4 (1) 368 aa
    Sequence Clusters UniGene:77148 (1)
    Sequence Information (all 19)
    ORTHOLOGY for sox11b ( Chr: 20 )
    CITATIONS (48)