ZFIN ID: ZDB-GENE-101007-2
Gene Name: ubiquitin specific peptidase 38
Gene Symbol: usp38    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have thiol-dependent ubiquitinyl hydrolase activity. Predicted to be involved in protein deubiquitination and ubiquitin-dependent protein catabolic process. Is expressed in female organism. Orthologous to human USP38 (ubiquitin specific peptidase 38).
Genome Resources: Alliance (1),  Gene:563778 (1),  Ensembl(GRCz11):ENSDARG00000075798 (2)
GENE EXPRESSION
All Expression Data: Table S1 from Newman et al., 2019
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa19527 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa25617 Point Mutation Unknown Splice Site ENU
    zko662a Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-usp38 1
    CRISPR2-usp38
    1
    MO1-usp38 N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH usp38 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH usp38 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein deubiquitination (more)
    Cellular Component cytosol (more)
    Molecular Function cysteine-type peptidase activity (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA usp38-202 (1)    Ensembl 3645
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM usp38 No data available
    MARKER RELATIONSHIPS
    usp38 Contained in: [BAC] CH73-355B6, DKEY-21M1 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_003197674 (1)
    Genomic GenBank:FP236452 (1) 54634 nt
    Select Tool
    Polypeptide UniProtKB:F1RBA1 (1) 1014 aa
    Sequence Information (all 9)
    ORTHOLOGY for usp38 ( Chr: 1 )
    CITATIONS (20)