ZFIN ID: ZDB-GENE-091118-27
Gene Name: whirlin a
Gene Symbol: whrna    Nomenclature History

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Previous Names: dfnb31 (1), dfnb31a (1), si:ch73-272g3.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to be involved in auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to colocalize with photoreceptor connecting cilium and photoreceptor inner segment. Human ortholog(s) of this gene implicated in Usher syndrome type 2D; autosomal recessive nonsyndromic deafness 31; and sensorineural hearing loss. Orthologous to human WHRN (whirlin).
Genome Resources: Alliance (1),  Ensembl(GRCz11):ENSDARG00000075362 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fh340 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la013975Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10839 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23889 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29545 Point Mutation Unknown Splice Site ENU
    sa29546 Point Mutation Unknown Premature Stop ENU
    whrna_unrecovered Point Mutation Unknown Unknown ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH whrna HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    autosomal recessive nonsyndromic deafness 31 Alliance Deafness, autosomal recessive 31 607084
    Usher syndrome type 2D Alliance Usher syndrome, type 2D 611383
    DISEASE ASSOCIATED WITH whrna VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process sensory perception of light stimulus (more)
    Cellular Component COLOCALIZES_WITH   photoreceptor connecting cilium (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA whrna-202 (1)    Ensembl 3469
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM whrna
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(rho:SFtag-whrna) rho whrna Danio rerio 1 1
    MARKER RELATIONSHIPS
    whrna Contained in: [BAC] CH73-50A21 (1), CH73-272G3 (1), CH211-181B18 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    Genomic GenBank:CR376852 (1) 157717 nt
    Select Tool
    Polypeptide UniProtKB:E7F2D8 (1) 939 aa
    Sequence Information (all 5)
    ORTHOLOGY for whrna ( Chr: 21 )
    CITATIONS (21)