ZFIN ID: ZDB-GENE-091116-32
Gene Name: protocadherin 1a
Gene Symbol: pcdh1a    Nomenclature History

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Previous Name: si:dkey-18f22.3 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to localize to integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PCDH1 (protocadherin 1).
Genome Resources: Alliance (1),  Ensembl(GRCz11):ENSDARG00000062720 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15672 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38793 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pcdh1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pcdh1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell adhesion (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pcdh1a-203 (1)    Ensembl 4201
    ncRNA pcdh1a-002 (1) 555
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pcdh1a No data available
    MARKER RELATIONSHIPS
    pcdh1a Contained in: [BAC] CH211-150K17 (1), DKEY-18F22 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    Genomic GenBank:BX004800 (1) 269096 nt Blast at MegaBLAST
    Polypeptide UniProtKB:F6NJQ3 (1) 1190 aa
    Sequence Information (all 4)
    ORTHOLOGY for pcdh1a ( Chr: 10 )
    CITATIONS (20)