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ZIRC
ZFIN ID: ZDB-GENE-081120-6
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Gene Name: SRY-box transcription factor 6
Gene Symbol: sox6
Sequence Ontology ID : SO:0001217

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Previous Names: sox6b (1), fc35a10, fc50e03, wu:fc35a10, wu:fc50e03

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA binding activity. Involved in adipose tissue development; muscle cell fate specification; and skeletal muscle tissue development. Predicted to localize to the nucleus. Human  ...
GENE EXPRESSION
All Expression Data: 7 figures from 6 publications
Wild-type Stages, Structures: Segmentation:10-13 somites (14.0h-16.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
i291 Unknown Unknown Unknown ZINC_FINGER_NUCLEASE
i292 Unknown Unknown Unknown ZINC_FINGER_NUCLEASE
la016058Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la016060Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la025941Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa9376 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa20951 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa38612 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa44663 Point Mutation Unknown Unknown ENU
    sa45277 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • tud38Gt Transgenic Insertion Intron 4 Unknown DNA
    Targeting reagents:
    PHENOTYPE
    Data: 10 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH sox6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sox6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process skeletal muscle tissue development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR027153 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
    • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA sox6-002 (1) 874
    Select Tool
    sox6-003 (1) 724
    Select Tool
    mRNA sox6-203 (1) 6184
    Select Tool
    sox6-205 (1) 749
    Select Tool
    sox6-206 (1) 7908
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sox6
    MARKER RELATIONSHIPS
    sox6 Contained in: [BAC] DKEY-48H11 (1) (order this), DKEY-246O4 (1) (order this), DKEYP-93A2 (1)
    sox6 Encodes: [EST] fc35a10, fc50e03
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001123009 (1) 2350 bp
    Select Tool
    Genomic GenBank:BX537340 (1) 192070 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QLT0 (1) 816 aa
    Select Tool
    Sequence Clusters UniGene:105964 (1)
    Sequence Information (all 34)
    OTHER sox6 GENE PAGES
  • Alliance (1)
  • Gene:567154 (1)
  • VEGA:OTTDARG00000035355 (1)
  • Ensembl(GRCz11):ENSDARG00000015536 (2)
    • ORTHOLOGY for sox6 ( Chr: 7 )
    CITATIONS (42)