ZFIN is now using GRCz12tu for Genomic Data
Gene
cntn3a.1
- ID
- ZDB-GENE-081030-10
- Name
- contactin 3a, tandem duplicate 1
- Symbol
- cntn3a.1 Nomenclature History
- Previous Names
-
- cntn3a
- si:ch211-247h9.1
- Type
- protein_coding_gene
- Location
- Chr: 23 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; neuron development; and synapse organization. Predicted to be active in axon; plasma membrane; and synapse. Orthologous to several human genes including CNTN4 (contactin 4).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR003961 | Fibronectin type III |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013098 | Immunoglobulin I-set |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036116 | Fibronectin type III superfamily |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Fibronectin type III | Fibronectin type III superfamily | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:F1QQK1 | InterPro | 1028 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cntn3a.1-201
(1)
|
Ensembl | 3,709 nt | ||
| mRNA |
cntn3a.1-202
(1)
|
Ensembl | 3,389 nt | ||
| ncRNA |
cntn3a.1-002
(1)
|
Ensembl | 610 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers