ZFIN ID: ZDB-GENE-080429-2
Gene Name: NLR family, CARD domain containing 5
Gene Symbol: nlrc5
Sequence Ontology ID : SO:0000704

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Previous Names: nod4, si:ch211-122c9.5

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity; orthologous to human NLRC5 (NLR family CARD domain containing 5).
GENE EXPRESSION
All Expression Data: Fig. 3 from Wu et al., 2017
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb48 Small Deletion Unknown Unknown CRISPR
ihb49 Indel Unknown Unknown CRISPR
ihb51 Insertion Unknown Unknown CRISPR
sa6509 Point Mutation Unknown Splice Site ENU
sa15814 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17363 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23274 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23275 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29013 Point Mutation Unknown Premature Stop ENU
    sa43078 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44887 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH nlrc5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nlrc5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function ATP binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR006553 (1)
  • InterPro:IPR007111 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR032675 (1)
  • PROSITE:PS50837 (1)
  • Pfam:PF05729 (1)
  • Pfam:PF13516 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA si:ch211-122c9.5-001 (1) 6425
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nlrc5 No data available
    MARKER RELATIONSHIPS
    nlrc5Contained in: [BAC] CH211-122C9 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_003200446 (1)
    Genomic GenBank:BX470170 (1) 108112bp
    Select Tool
    Polypeptide UniProtKB:K7DYB6 (1) 1746aa
    Sequence Information (all 25)
    OTHER nlrc5 GENE PAGES
  • Alliance (1)
  • Gene:100535184 (1)
  • VEGA:OTTDARG00000039043 (1)
  • Ensembl(GRCz11):ENSDARG00000024631 (2)
  • ORTHOLOGY for nlrc5 (Chr: 18)
    CITATIONS (15)