ZFIN ID: ZDB-GENE-080425-4
Gene Name: chondroitin sulfate proteoglycan 5a
Gene Symbol: cspg5a    Nomenclature History

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Previous Name: cspg5

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to be involved in cell projection morphogenesis and trans-synaptic signaling, modulating synaptic transmission. Predicted to localize to synapse. Is expressed in female organism. Orthologous to human CSPG5 (chondroitin sulfate proteoglycan 5).
Genome Resources: Alliance (1),  Gene:558206 (1),  Ensembl(GRCz11):ENSDARG00000069981 (2)
GENE EXPRESSION
All Expression Data: Table S1 from Newman et al., 2019
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa22925 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cspg5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cspg5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nervous system development (more)
    Cellular Component integral component of membrane (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cspg5a-202 (1)    Ensembl 2265
    ncRNA cspg5a-002 (1) 1370
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cspg5a No data available
    MARKER RELATIONSHIPS
    cspg5a Contained in: [BAC] CH73-68F8, CH211-215K15 (1), DKEYP-75E9 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_005158277 (1)
    Genomic GenBank:CR391962 (1) 144859 nt
    Select Tool
    Polypeptide UniProtKB:F8W3W2 (1) 532 aa
    Sequence Information (all 34)
    ORTHOLOGY for cspg5a ( Chr: 16 )
    CITATIONS (18)