ZFIN ID: ZDB-GENE-080403-5
Gene Name: nuclear receptor subfamily 1, group D, member 4a
Gene Symbol: nr1d4a
Sequence Ontology ID : SO:0000704

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Previous Names: gb:dq017622, reverbgamma-A (1)

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have several functions, including RNA polymerase II regulatory region sequence-specific DNA binding activity, regulation of cellular process, and signaling receptor activity; predicted  ...
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 7 figures (9 images) from Thisse et al., 2008 [dq017622]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010894Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1310 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31092 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44031 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH nr1d4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nr1d4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000536 (1)
  • InterPro:IPR001628 (1)
  • InterPro:IPR001723 (1)
  • InterPro:IPR001728 (1)
  • InterPro:IPR013088 (1)
  • InterPro:IPR035500 (1)
  • PROSITE:PS00031 (1)
  • PROSITE:PS51030 (1)
  • PROSITE:PS51843 (1)
  • Pfam:PF00104 (1)
  • Pfam:PF00105 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nr1d4a-201 (1) 1986
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nr1d4a No data available
    MARKER RELATIONSHIPS
    nr1d4aContained in: [BAC] DKEY-18F23 (1) (order this), DKEY-43N10 (1) (order this)
    nr1d4aEncodes: [EST] dq017622 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001285536 (1) 1713bp
    Genomic GenBank:BX465853 (1) 220945bp Blast at MegaBLAST
    Polypeptide UniProtKB:B8A510 (1) 570aa
    Sequence Clusters UniGene:103114 (1)
    Sequence Information (all 19)
    OTHER nr1d4a GENE PAGES
  • Alliance (1)
  • Gene:563150 (1)
  • VEGA:OTTDARG00000023190 (1)
  • Ensembl(GRCz11):ENSDARG00000031161 (2)
  • ORTHOLOGY for nr1d4a (Chr: 23)
    CITATIONS (27)