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ZIRC
ZFIN ID: ZDB-GENE-080327-7
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Gene Name: SLIT and NTRK-like family, member 2
Gene Symbol: slitrk2    Nomenclature History

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Previous Names: sc:d0319 (1), wu:fj38g04

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to be involved in axonogenesis. Predicted to localize to the integral component of membrane. Is expressed in central nervous system; neuroepithelial cell; and retinal neural layer. Orthologous to human SLITRK2 (SLIT and NTRK like family member 2).
Genome Resources: Alliance (1),  Gene:794165 (1),  Ensembl(GRCz11):ENSDARG00000006636 (2)
GENE EXPRESSION
All Expression Data: 14 figures from 2 publications
Directly Submitted Expression Data: 7 figures (16 images) from Thisse et al., 2008 [cssl:d0319]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11011 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa15552 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa19079 Point Mutation Unknown Premature Stop ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-slitrk2
    		1
    CRISPR2-slitrk2
    		1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH slitrk2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH slitrk2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axonogenesis (more)
    Cellular Component integral component of membrane (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000372 (1)
  • InterPro:IPR000483 (1)
  • InterPro:IPR001611 (1)
  • InterPro:IPR003591 (1)
  • InterPro:IPR032675 (1)
  • PROSITE:PS51450 (1)
  • Pfam:PF13855 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA slitrk2-201 (1)    Ensembl 3032
    Select Tool
    Browsers: NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM slitrk2 No data available
    MARKER RELATIONSHIPS
    slitrk2 Contained in: [BAC] CH211-184I23 (1) (order this)
    slitrk2 Encodes: [EST] cssl:d0319 (1) (order this), fj38g04
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001332731 (1) 3479 bp
    Select Tool
    Genomic GenBank:CR762422 (1) 151177 bp
    Select Tool
    Polypeptide UniProtKB:F1QE14 (1) 854 aa
    Select Tool
    Sequence Clusters UniGene:139401 (1)
    Sequence Information (all 18)
    ORTHOLOGY for slitrk2 ( Chr: 14 )
    CITATIONS (19)