ZFIN ID: ZDB-GENE-080327-17
Gene Name: leucine rich repeat and fibronectin type III domain containing 5a
Gene Symbol: lrfn5a
Sequence Ontology ID : SO:0000704

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Previous Names: sc:d0343 (1), si:ch73-206h2.1

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the integral component of membrane; orthologous to human LRFN5 (leucine rich repeat and fibronectin type III domain containing 5).
GENE EXPRESSION
Directly Submitted Expression Data: 7 figures (16 images) from Thisse et al., 2008 [cssl:d0343]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH lrfn5a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH lrfn5a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process NOT axonogenesis (more)
Cellular Component integral component of membrane (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR003591 (1)
  • InterPro:IPR003598 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013098 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR026879 (1)
  • InterPro:IPR032675 (1)
  • InterPro:IPR036116 (1)
  • InterPro:IPR036179 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS51450 (1)
  • Pfam:PF07679 (1)
  • Pfam:PF13855 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lrfn5a-201 (1) 2361
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lrfn5a No data available
    MARKER RELATIONSHIPS
    lrfn5aContained in: [BAC] CH73-206H2 (1) (order this)
    lrfn5aEncodes: [EST] cssl:d0343 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001921639 (1) 3543bp
    Genomic GenBank:CU928225 (1) 102252bp
    Select Tool
    Polypeptide UniProtKB:F1Q9H7 (1) 786aa
    Sequence Clusters UniGene:151695 (1)
    Sequence Information (all 13)
    OTHER lrfn5a GENE PAGES
  • Alliance (1)
  • Gene:100144400 (1)
  • VEGA:OTTDARG00000038591 (1)
  • Ensembl(GRCz11):ENSDARG00000071230 (2)
  • ORTHOLOGY for lrfn5a (Chr: 17)
    CITATIONS (15)