ZFIN ID: ZDB-GENE-080303-16
Gene Name: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Gene Symbol: sema4c
Sequence Ontology ID : SO:0000704

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Previous Name: sc:d411 (1)

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have chemorepellent activity, neuropilin binding activity, and semaphorin receptor binding activity; predicted to be involved in several processes, including negative chemotaxis,  ...
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2008 [cssl:d411]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sema4c HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sema4c VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process negative chemotaxis (more)
Cellular Component integral component of membrane (more)
Molecular Function NOT neuropilin binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR002165 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • InterPro:IPR036179 (1)
  • InterPro:IPR036352 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF01403 (1)
  • Pfam:PF01437 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema4c-001 (1) 3075
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM sema4c No data available
    MARKER RELATIONSHIPS
    sema4cContained in: [BAC] CH211-244O22 (1) (order this)
    sema4cEncodes: [cDNA] cssl:d411 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128246 (1) 2592bp
    Genomic GenBank:CR392037 (1) 140415bp
    Select Tool
    Polypeptide UniProtKB:A4JYS4 (1) 863aa
    Sequence Clusters UniGene:21131 (1)
    Sequence Information (all 19)
    OTHER sema4c GENE PAGES
  • Alliance (1)
  • Gene:561895 (1)
  • VEGA:OTTDARG00000015887 (1)
  • Ensembl(GRCz11):ENSDARG00000079611 (2)
  • ORTHOLOGY for sema4c (Chr: 5)
    CITATIONS (19)