ZFIN ID: ZDB-GENE-070803-1
Gene Name: tudor domain containing 1
Gene Symbol: tdrd1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: im:7155161 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Exhibits piRNA binding activity. Involved in P granule organization. Predicted to localize to pi-body. Is expressed in oocyte stage I; oocyte stage II; primordial germ cell; and testis. Orthologous to human TDRD1 (tudor domain containing 1).
Genome Resources: Alliance (1),  Gene:553522 (1),  Ensembl(GRCz11):ENSDARG00000007465 (1)
GENE EXPRESSION
All Expression Data: 11 figures from 4 publications
Directly Submitted Expression Data: 7 figures (6 images) from Thisse et al., 2004 [IMAGE:7155161]
Wild-type Stages, Structures: Pharyngula:High-pec (42.0h-48.0h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fh244 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa7364 Point Mutation Unknown Missense ENU
    sa16285 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42057 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tdrd1_unrecovered Point Mutation Unknown Unknown ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-tdrd1 N/A 1
    DISEASE ASSOCIATED WITH tdrd1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tdrd1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process P granule organization (more)
    Cellular Component pi-body (more)
    Molecular Function piRNA binding (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA tdrd1-201 (1)    Ensembl 714
    tdrd1-202 (1)    Ensembl 4166
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-tdrd1 polyclonal Rabbit IHC, WB 2
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM tdrd1 No data available
    MARKER RELATIONSHIPS
    tdrd1 Contained in: [BAC] CH211-225B10 (1)
    tdrd1 Encodes: [EST] IMAGE:7155161 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001164028 (1) 4167 nt
    Genomic GenBank:CR932360 (1) 164973 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8QMA4 (1) 1176 aa
    Sequence Information (all 17)
    ORTHOLOGY for tdrd1 ( Chr: 12 )
    CITATIONS (28)