ZFIN Gene: col6a2

ZFIN ID: ZDB-GENE-070501-7

GENE EXPRESSION
All Expression Data:	8 figures from 2 publications
Directly Submitted Expression Data:	7 figures (17 images) from Thisse et al., 2004 [IMAGE:7156276]
Wild-type Stages, Structures:	Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
	dermis , epidermis , gut , pharyngeal arch (all 5)

MUTANTS AND TARGETED KNOCKDOWNS

Alleles:

sa15560

PHENOTYPE

Phenotype of Human Orthologue	OMIM Phenotype ID
Bethlem myopathy	158810
Ullrich congenital muscular dystrophy	254090
?Myosclerosis, congenital	255600

GENE ONTOLOGY No data available

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR002035 (1) InterPro:IPR008160 (1)	PROSITE:PS50234 (1)	Pfam:PF00092 (1) Pfam:PF01391 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	col6a2-001 (1)	5960	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega

GENE PRODUCT DESCRIPTION

ANTIBODIES No data available

PLASMIDS

CONSTRUCTS WITH SEQUENCES FROM col6a2 No data available

SEGMENT (CLONE AND PROBE) RELATIONSHIPS

col6a2 Contained in:	[BAC] CH211-227N13 (order this), DKEY-287I12
col6a2 Encodes:	[EST] IMAGE:7156276 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:XM_691072 (1)	3759 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
Genomic	GenBank:BX323597 (1)	177773 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:E7FCV8 (1)	1015 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast Vega Protein Blast
Sequence Clusters	UniGene:91109 (1)

OTHER col6a2 GENE PAGES

Gene:567771 (1)

VEGA:OTTDARG00000027665 (1)

VEGA:OTTDARG00000035468 (1)

Ensembl(Zv9):ENSDARG00000061436 (1)

ORTHOLOGY

CITATIONS (11)