ZFIN ID: ZDB-GENE-070501-7
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Gene Name: collagen, type VI, alpha 2
Gene Symbol: col6a2
Sequence Ontology ID : SO:0000704

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Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 12 figures from 4 publications
Directly Submitted Expression Data: 7 figures (17 images) from Thisse et al., 2004 [IMAGE:7156276]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15560 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa41880 Point Mutation Unknown Premature Stop ENU
    Targeting reagents:
    PHENOTYPE
    Data: 6 figures from Ramanoudjame et al., 2015
    Observed in:
    DISEASE ASSOCIATED WITH col6a2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Bethlem myopathy Bethlem myopathy 1 158810
    Ullrich congenital muscular dystrophy Ullrich congenital muscular dystrophy 1 254090
    ?Myosclerosis, congenital 255600
    DISEASE ASSOCIATED WITH col6a2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axonogenesis (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002035 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR036465 (1)
    		•
  • PROSITE:PS50234 (1)
    		•
  • Pfam:PF00092 (1)
  • Pfam:PF01391 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col6a2-001 (1) 5960
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM col6a2 No data available
    MARKER RELATIONSHIPS
    col6a2Contained in: [BAC] CH211-227N13 (order this), DKEY-287I12 (order this)
    col6a2Encodes: [EST] IMAGE:7156276 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_691072 (1) 4216bp
    Select Tool
    Genomic GenBank:BX323597 (1) 177773bp
    Select Tool
    Polypeptide UniProtKB:E7FCV8 (1) 1015aa
    Select Tool
    Sequence Clusters UniGene:91109 (1)
    Sequence Information (all 18)
    OTHER col6a2 GENE PAGES
  • Alliance (1)
  • Gene:567771 (1)
  • VEGA:OTTDARG00000027665 (1)
  • VEGA:OTTDARG00000035468 (1)
  • Ensembl(GRCz11):ENSDARG00000061436 (2)
    • ORTHOLOGY for col6a2 (Chr: 11)
    CITATIONS (18)