Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-070501-7
Gene Name: collagen, type VI, alpha 2
Gene Symbol: col6a2
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 7 figures (17 images) from Thisse et al., 2004 [IMAGE:7156276]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  dermis, epidermis, gut, pharyngeal arch (all 5) expand
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa15560
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Bethlem myopathy 158810
Myosclerosis, congenital 255600
Ullrich congenital muscular dystrophy 254090
GENE ONTOLOGY No data available
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002035 (1)
  • InterPro:IPR008160 (1)
  • PROSITE:PS50234 (1)
  • Pfam:PF00092 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col6a2-001 (1) 3399
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM col6a2 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    col6a2 Contained in: [BAC] CH211-227N13 (order this), DKEY-287I12
    col6a2 Encodes: [EST] IMAGE:7156276 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_691072 (1) 4216 bp
    Genomic GenBank:BX323597 (1) 177773 bp
    Select Tool
    Polypeptide UniProtKB:E7FCV8 (1) 1015 aa
    Sequence Clusters UniGene:91109 (1)
    Sequence Information (all 14)
    OTHER col6a2 GENE PAGES
  • Gene:567771 (1)
  • VEGA:OTTDARG00000027665 (1)
  • VEGA:OTTDARG00000035468 (1)
  • Ensembl(Zv9):ENSDARG00000061436 (1)
  • MAPPING INFORMATION
    Chr: 11 Details
    ORTHOLOGY
      Evidence
    Species Symbol Chromosome (Position) Accession # AA CL
    Zebrafish col6a2 11  
    Human COL6A2 21 (21q22.3)
  • OMIM:120240
  • Gene:1292
  • CITATIONS (10)