ZFIN ID: ZDB-GENE-070501-7
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Gene Name: collagen, type VI, alpha 2
Gene Symbol: col6a2
Sequence Ontology ID : SO:0000704

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Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 3 publications
Directly Submitted Expression Data: 7 figures (17 images) from Thisse et al., 2004 [IMAGE:7156276]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  cornea, dermis, epidermis, gut (all 12) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15560 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa41880 Point Mutation Unknown Premature Stop ENU
    Targeting reagents: MO1-col6a2 (1)
    PHENOTYPE
    Data: 6 figures from Ramanoudjame et al., 2015
    Observed in: axonogenesis, eye, integument vertical myoseptum, motor neuron axon (all 18) expand
    DISEASE ASSOCIATED WITH col6a2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Bethlem myopathy Bethlem myopathy 1 158810
    Ullrich congenital muscular dystrophy Ullrich congenital muscular dystrophy 1 254090
    ?Myosclerosis, congenital 255600
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axonogenesis (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002035 (1)
  • InterPro:IPR008160 (1)
    		•
  • PROSITE:PS50234 (1)
    		•
  • Pfam:PF00092 (1)
  • Pfam:PF01391 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col6a2-001 (1) 5960
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-col6a2 (1)
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM col6a2 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    col6a2Contained in: [BAC] CH211-227N13 (order this), DKEY-287I12 (order this)
    col6a2Encodes: [EST] IMAGE:7156276 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009306168 (1) 4192bp
    Select Tool
    Genomic GenBank:BX323597 (1) 177773bp
    Select Tool
    Polypeptide UniProtKB:E7FCV8 (1) 1015aa
    Select Tool
    Sequence Clusters UniGene:91109 (1)
    Sequence Information (all 13)
    OTHER col6a2 GENE PAGES
  • Gene:567771 (1)
  • VEGA:OTTDARG00000027665 (1)
  • VEGA:OTTDARG00000035468 (1)
  • Ensembl(GRCz10):ENSDARG00000061436 (1)
    • ORTHOLOGY for col6a2 (Chr: 11)
    CITATIONS (13)