ZFIN ID: ZDB-GENE-070501-7
Gene Name: collagen, type VI, alpha 2
Gene Symbol: col6a2
Location: Chr: 11   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 7 figures (17 images) from Thisse et al., 2004 [IMAGE:7156276]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  dermis, epidermis, gut, pharyngeal arch (all 5) expand
MUTANTS AND TARGETED KNOCKDOWNS

Allele Type Mutagen Suppliers
sa15560 Point Mutation ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col6a2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Bethlem myopathy Bethlem myopathy 158810
    Ullrich congenital muscular dystrophy Ullrich congenital muscular dystrophy 254090
    ?Myosclerosis, congenital 255600
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002035 (1)
  • InterPro:IPR008160 (1)
  • PROSITE:PS50234 (1)
  • Pfam:PF00092 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col6a2-001 (1) 5960
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM col6a2 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    col6a2 Contained in: [BAC] CH211-227N13 (order this), DKEY-287I12 (order this)
    col6a2 Encodes: [EST] IMAGE:7156276 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_691072 (1) 3759 bp
    Genomic GenBank:BX323597 (1) 177773 bp
    Select Tool
    Polypeptide UniProtKB:E7FCV8 (1) 1015 aa
    Sequence Clusters UniGene:91109 (1)
    Sequence Information (all 15)
    OTHER col6a2 GENE PAGES
  • Gene:567771 (1)
  • VEGA:OTTDARG00000027665 (1)
  • VEGA:OTTDARG00000035468 (1)
  • Ensembl(Zv9):ENSDARG00000061436 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish col6a2 11  
    Human COL6A2 21 (21q22.3)
  • OMIM:120240
  • Gene:1292
  • Orthology Details
    CITATIONS (11)