ZFIN ID: ZDB-GENE-070410-27
Gene Name: SWI5-dependent homologous recombination repair protein 1
Gene Symbol: sfr1    Nomenclature History

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Previous Names: meir5, zgc:162162

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have nuclear receptor transcription coactivator activity. Predicted to be involved in double-strand break repair via homologous recombination and positive regulation of transcription, DNA-templated. Predicted to localize to Swi5-Sfr1 complex. Orthologous to human SFR1 (SWI5 dependent homologous recombination repair protein 1).
Genome Resources: Alliance (1),  Gene:568747 (1),  Ensembl(GRCz11):ENSDARG00000021974 (1)
GENE EXPRESSION
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa35484 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sfr1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sfr1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process double-strand break repair via homologous recombination (more)
    Cellular Component nucleus (more)
    Molecular Function nuclear receptor transcription coactivator activity (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sfr1-201 (1)    Ensembl 1221
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sfr1 No data available
    MARKER RELATIONSHIPS
    sfr1 Contained in: [BAC] CH211-223P8 (1)
    sfr1 Encodes: [cDNA] MGC:162162 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001082860 (1) 1116 nt
    Genomic GenBank:AL929005 (1) 166364 nt
    Select Tool
    Polypeptide UniProtKB:B7ZD04 (1) 201 aa
    Sequence Information (all 9)
    ORTHOLOGY for sfr1 ( Chr: 13 )
    CITATIONS (17)