ZFIN ID: ZDB-GENE-070216-1
Gene Name: orthopedia homeobox a
Gene Symbol: otpa
Sequence Ontology ID : SO:0000704

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Previous Names: otp2 (1), otp, otpb

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 26 figures from 13 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
az7 Indel Unknown Unknown CRISPR
az8 Indel Unknown Unknown CRISPR
m866 Unknown Unknown Unknown ENU
sa44954 Point Mutation Unknown Unknown ENU
Targeting reagents:
PHENOTYPE
Data: 9 figures from 5 publications
Observed in:
DISEASE ASSOCIATED WITH otpa HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH otpa VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process forebrain neuron development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 12)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000047 (1)
  • InterPro:IPR001356 (1)
  • InterPro:IPR003654 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • PROSITE:PS50803 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF03826 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA otpa-001 (1) 1852
    otpa-002 (1) 1150
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM otpa
    MARKER RELATIONSHIPS
    otpaContained in: [BAC] DKEYP-1D11 (1)
    otpaEncodes: [cDNA] MGC:193949 (1) (order this), MGC:193951 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128703 (1) 1064bp
    Genomic GenBank:CU459136 (1) 159343bp
    Select Tool
    Polypeptide UniProtKB:B3DGA5 (1) 332aa
    Sequence Clusters UniGene:87162 (1)
    Sequence Information (all 17)
    OTHER otpa GENE PAGES
  • Alliance (1)
  • Gene:560759 (1)
  • VEGA:OTTDARG00000031279 (1)
  • Ensembl(GRCz11):ENSDARG00000014201 (2)
  • ORTHOLOGY for otpa (Chr: 21)
    CITATIONS (56)