ZFIN ID: ZDB-GENE-070209-50
Gene Name: zgc:158846
Gene Symbol: zgc:158846
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: krtt2c6 (1), wu:fb58f07

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have structural molecule activity; predicted to localize to the keratin filament; orthologous to several human genes including KRT7 (keratin 7).

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

GENE EXPRESSION
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18246 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20764 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:158846 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:158846 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component intermediate filament (more)
    Molecular Function structural molecule activity (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001664 (1)
  • InterPro:IPR003054 (1)
  • InterPro:IPR018039 (1)
  • InterPro:IPR032444 (1)
  • InterPro:IPR039008 (1)
  • PROSITE:PS00226 (1)
  • PROSITE:PS51842 (1)
  • Pfam:PF00038 (1)
  • Pfam:PF16208 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA zgc:158846-201 (1) 1917
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:158846 No data available
    MARKER RELATIONSHIPS
    zgc:158846Contained in: [BAC] DKEY-195M11 (1) (order this)
    zgc:158846Encodes: [EST] fb58f07
    [cDNA] MGC:158846 (1) (order this), MGC:174196 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001083023 (1) 1966bp
    Genomic RefSeq:NW_018394661 (1) Blast at MegaBLAST
    Polypeptide UniProtKB:A2RV44 (1) 486aa
    Sequence Clusters UniGene:4854 (1)
    Sequence Information (all 19)
    OTHER zgc:158846 GENE PAGES
  • Alliance (1)
  • Gene:100009654 (1)
  • VEGA:OTTDARG00000027289 (1)
  • ORTHOLOGY for zgc:158846 (Chr: 6)
    CITATIONS (17)