header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-070209-167
Gene Name: collagen, type XI, alpha 1a
Gene Symbol: col11a1a
Sequence Ontology ID : SO:0001217

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: col11a1, wu:fb34e11, wu:fc11b03, zgc:158335 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Predicted to localize to the collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome; autosomal dominant  ...
PHENOTYPE No data available
DISEASE ASSOCIATED WITH col11a1a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
fibrochondrogenesis Fibrochondrogenesis 1 228520
Stickler syndrome Stickler syndrome, type II 604841
Marshall syndrome 154780
?Deafness, autosomal dominant 37 618533
{Lumbar disc herniation, susceptibility to} 603932
DISEASE ASSOCIATED WITH col11a1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process growth plate cartilage chondrocyte morphogenesis (more)
Cellular Component collagen trimer (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 6)
TRANSCRIPTS
Type Name Length (bp) Analysis
mRNA col11a1a-201 (1) 6834
col11a1a-202 (1) 5740
 Withdrawn Transcriptsextinct
GENE PRODUCT DESCRIPTION No description available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM col11a1a No data available
MARKER RELATIONSHIPS
col11a1a Contained in: [BAC] CH73-178J6 (1) (order this), CH211-190F24 (1) (order this), CH211-287N14 (1) (order this)
col11a1a Encodes: [EST] bn0aa074zg09 (1), fb34e11, fc11b03, IMAGE:7140282 (1) (order this), tdsubs_rzpd609-5k2
[cDNA] MGC:158335 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001083844 (1) 5740 bp
Genomic RefSeq:NW_018395181 (1) Blast at MegaBLAST
Polypeptide UniProtKB:D6MUD2 (1) 1813 aa
Sequence Clusters UniGene:3536 (1)
Sequence Information (all 45)
ORTHOLOGY for col11a1a ( Chr: 24 )
CITATIONS (34)