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ZIRC
ZFIN ID: ZDB-GENE-060810-50
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Gene Name: RAD54 homolog B
Gene Symbol: rad54b
Sequence Ontology ID : SO:0000704

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Previous Names: im:7137737, im:7153525

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA translocase activity. Predicted to be involved in double-strand break repair via homologous recombination and reciprocal meiotic recombination. Predicted to localize to the  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7137737]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7153525]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2853 Point Mutation Unknown Premature Stop ENU
sa42732 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rad54b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    colorectal cancer Colon cancer, somatic 114500
    non-Hodgkin lymphoma Lymphoma, non-Hodgkin, somatic 605027
    DISEASE ASSOCIATED WITH rad54b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process double-strand break repair via homologous recombination (more)
    Cellular Component nucleus (more)
    Molecular Function ATP binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000330 (1)
  • InterPro:IPR001650 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR038718 (1)
    		•
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
    		•
  • Pfam:PF00176 (1)
  • Pfam:PF00271 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rad54b-201 (1) 3229
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rad54b No data available
    MARKER RELATIONSHIPS
    rad54bContained in: [BAC] CH211-79L20 (order this)
    rad54bEncodes: [EST] IMAGE:7137737 (1) (order this), IMAGE:7153525 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_683887 (1) 3289bp
    Select Tool
    Genomic GenBank:BX511010 (1) 156317bp
    Select Tool
    Polypeptide UniProtKB:E9QHY4 (1) 917aa
    Select Tool
    Sequence Clusters UniGene:16441 (1)
    Sequence Information (all 22)
    OTHER rad54b GENE PAGES
  • Alliance (1)
  • Gene:560482 (1)
  • VEGA:OTTDARG00000033319 (1)
  • Ensembl(GRCz11):ENSDARG00000092134 (2)
    • ORTHOLOGY for rad54b (Chr: 16)
    CITATIONS (15)