ZFIN Gene: gipc1

ZFIN ID: ZDB-GENE-060726-1

ZFIN ID: ZDB-GENE-060726-1

Gene Name:

GIPC PDZ domain containing family, member 1

Gene Symbol:

gipc1

Sequence Ontology ID :

SO:0001217

Previous Names:

rgs19ip1 (1), synectin (1), z-synectin (1)

Location:

Chr: 3 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Exhibits MAP kinase activity. Involved in angiogenesis; artery morphogenesis; and lymphangiogenesis. Is expressed in dorsal aorta; neural tube; posterior cardinal vein; and somite. Orthologous to ...

GENE EXPRESSION
All Expression Data:	4 figures from 2 publications
Wild-type Stages, Structures:	Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
	dorsal aorta neural tube posterior cardinal vein somite whole organism

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa40158	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)
skt1	Indel	Unknown	Unknown	CRISPR
skt2	Insertion	Unknown	Unknown	CRISPR

Targeting reagents:

PHENOTYPE

Data:	5 figures from 2 publications
Observed in:	dorsal aorta angiogenic sprout dorsal longitudinal anastomotic vessel intersegmental vessel MAP kinase activity posterior cardinal vein vascular sprouts thoracic duct vascular lymphangioblast

DISEASE ASSOCIATED WITH gipc1 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH gipc1 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	angiogenesis (more)
Molecular Function	MAP kinase activity (more)

GO Terms (all 5)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR001478 (1) InterPro:IPR017379 (1) InterPro:IPR036034 (1)	PROSITE:PS50106 (1)	Pfam:PF00595 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	gipc1-201 (1)	1296	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION No description available

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM gipc1 No data available

MARKER RELATIONSHIPS

gipc1 Contained in:	[BAC] CH211-120F15 (order this)
gipc1 Encodes:	[cDNA] MGC:194530 (1) (order this), MGC:194545 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001004018 (1)	1008 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX649515 (1)	153400 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q6B337 (1)	335 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:114470 (1)

Sequence Information (all 20)

OTHER gipc1 GENE PAGES

Alliance (1)

Gene:445568 (1)

VEGA:OTTDARG00000027120 (1)

Ensembl(GRCz11):ENSDARG00000104483 (1)

ORTHOLOGY for gipc1 ( Chr: 3 )

CITATIONS (20)

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