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ZIRC
ZFIN ID: ZDB-GENE-060526-181
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Gene Name: chemokine (C-C motif) ligand 19a, tandem duplicate 1
Gene Symbol: ccl19a.1    Nomenclature History

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Previous Names: ccl-c5a, CCL-chr5a (1), CCL19aa (1), dr-scNA10579-CCL19-34.3%-DN (1), si:ch211-89f7.4 (2)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have CCR chemokine receptor binding activity and chemokine activity. Involved in dorsal/ventral pattern formation. Predicted to localize to the extracellular space. Orthologous to human CCL19 (C-C motif chemokine ligand 19).
Genome Resources: Alliance (1),  Gene:794891 (1),  Ensembl(GRCz11):ENSDARG00000058389 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010958Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la015549Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa38454 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-ccl19a.1 N/A 1
    PHENOTYPE
    Data: Fig. 6 from Wu et al., 2012
    Observed in:
    DISEASE ASSOCIATED WITH ccl19a.1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ccl19a.1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process dorsal/ventral pattern formation (more)
    Cellular Component extracellular region (more)
    Molecular Function chemokine activity (more)
    GO Terms (all 19)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000827 (1)
  • InterPro:IPR001811 (1)
  • InterPro:IPR036048 (1)
  • InterPro:IPR039809 (1)
  • PROSITE:PS00472 (1)
  • Pfam:PF00048 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ccl19a.1-201 (1)    Ensembl 949
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ccl19a.1 No data available
    MARKER RELATIONSHIPS
    ccl19a.1 Contained in: [BAC] CH211-89F7 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082906 (1)
    Select Tool
    Genomic GenBank:BX957246 (1) 186135 bp
    Select Tool
    Polypeptide UniProtKB:A2BIR2 (1) 119 aa
    Select Tool
    Sequence Clusters UniGene:133987 (1)
    Sequence Information (all 12)
    ORTHOLOGY for ccl19a.1 ( Chr: 5 )
    CITATIONS (33)