Gene

asgr1c.2

ID
ZDB-GENE-060526-152
Name
asialoglycoprotein receptor 1c, tandem duplicate 2
Symbol
asgr1c.2 Nomenclature History
Previous Names
  • asgrl3
  • si:ch211-283g2.3 (1)
Type
protein_coding_gene
Location
Chr: 5 Mapping Details/Browsers
Description
Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CLEC10A (C-type lectin domain containing 10A) and ASGR2 (asialoglycoprotein receptor 2).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa6959Allele with one point mutationUnknownMissense, Splice SiteENU
sa33522Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
No data available
Human Disease
Associated With asgr1c.2 Human Ortholog
No data available
Associated With asgr1c.2 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR018378 C-type lectin, conserved site
Domain IPR001304 C-type lectin-like
Domain IPR033989 CD209-like, C-type lectin-like domain
Family IPR050111 C-type lectin and snaclec domain-containing protein
Homologous_superfamily IPR016186 C-type lectin-like/link domain superfamily
1 - 5 of 6 Show all
Domain Details Per Protein
Protein Additional Resources Length CD209-like, C-type lectin-like domain C-type lectin and snaclec domain-containing protein C-type lectin, conserved site C-type lectin fold C-type lectin-like C-type lectin-like/link domain superfamily
UniProtKB:A0AB32TVV3 InterPro 279
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 5
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA si:ch211-283g2.3-201 (1)
Ensembl
Ensembl 854 nt
ZFIN BLAST
mRNA si:ch211-283g2.3-202 (1)
Ensembl
Ensembl 4,056 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-283G2ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_021476730 (1)
ZFIN BLASTNCBI BLASTMegaBLASTEnsemblUCSC BLAT
GenomicGenBank:CR407559149707 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0AB32TVV3 (1)279 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
No data available
Citations
TSV
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