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General Information
ZIRC
ZFIN ID: ZDB-GENE-060518-5
Gene Name: ubiquitin specific peptidase 40
Gene Symbol: usp40
Sequence Ontology ID : SO:0001217

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have cysteine-type endopeptidase activity and thiol-dependent ubiquitin-specific protease activity. Involved in pronephric glomerulus development. Predicted to localize to the cytosol.  ...
GENE EXPRESSION
All Expression Data: Fig. 8 from Takagi et al., 2017
Wild-type Stages, Structures: Larval:Day 4 (96.0h-120.0h) to Larval:Day 4 (96.0h-120.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20637 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20638 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa20639 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26680 Point Mutation Unknown Splice Site ENU
    Targeting reagents:
    DISEASE ASSOCIATED WITH usp40 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH usp40 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process pronephric glomerulus development (more)
    Molecular Function thiol-dependent ubiquitinyl hydrolase activity (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA usp40-201 (1) 4651
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM usp40 No data available
    MARKER RELATIONSHIPS
    usp40 Contained in: [BAC] CH73-267F5 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001921318 (1)
    Genomic GenBank:CU571254 (1) 56594 bp
    Select Tool
    Polypeptide UniProtKB:F1Q7D2 (1) 1263 aa
    Sequence Clusters UniGene:80435 (1)
    Sequence Information (all 9)
    ORTHOLOGY for usp40 ( Chr: 6 )
    CITATIONS (17)