ZFIN ID: ZDB-GENE-060503-664
Gene Name: lysine (K)-specific demethylase 4B
Gene Symbol: kdm4b
Sequence Ontology ID : SO:0000704

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Previous Names: jmjd2b (1), si:ch211-124a3.4 (1)

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(Including Attributions)
Location: Chr: 22 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have several functions, including chromatin binding activity, histone demethylase activity (H3-K9 specific), and methylated histone binding activity; predicted to localize to the histone  ...
GENE EXPRESSION
All Expression Data: Fig. S1 from Yu et al., 2018
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la022356Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10758 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15777 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17996 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44979 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH kdm4b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH kdm4b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001965 (1)
  • InterPro:IPR002999 (1)
  • InterPro:IPR003347 (1)
  • InterPro:IPR003349 (1)
  • InterPro:IPR011011 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR034732 (1)
  • InterPro:IPR040477 (1)
  • PROSITE:PS51183 (1)
  • PROSITE:PS51184 (1)
  • PROSITE:PS51805 (1)
  • Pfam:PF02373 (1)
  • Pfam:PF02375 (1)
  • Pfam:PF18104 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA kdm4b-001 (1) 5293
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM kdm4b No data available
    MARKER RELATIONSHIPS
    kdm4bContained in: [BAC] CH211-124A3 (1) (order this)
    [Fosmid] CH1073-159L14 (1) (order this)
    kdm4bEncodes: [cDNA] MGC:198425 (1) (order this), MGC:198427 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082805 (1) 5293bp
    Genomic GenBank:BX927276 (1) 166844bp
    Select Tool
    Polypeptide UniProtKB:Q1LUQ0 (1) 1134aa
    Sequence Clusters UniGene:81759 (1)
    Sequence Information (all 20)
    OTHER kdm4b GENE PAGES
  • Alliance (1)
  • Gene:556504 (1)
  • VEGA:OTTDARG00000014585 (1)
  • Ensembl(GRCz11):ENSDARG00000099675 (1)
  • ORTHOLOGY for kdm4b (Chr: 22)
    CITATIONS (23)